| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,553,143 – 19,553,236 |
| Length | 93 |
| Max. P | 0.891040 |
| Location | 19,553,143 – 19,553,236 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 92.57 |
| Mean single sequence MFE | -22.60 |
| Consensus MFE | -20.92 |
| Energy contribution | -21.32 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.93 |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.807567 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19553143 93 + 20766785 AUAAAGGUAAAUAAUUUAUGCUACUUUAUUUGCAUUGCCACCGCAGAACUUUUACCGGUUAAGGCGUGCGCACACUUGGCACGCCGAUUUAUC .....((((((.......(((..........)))((((....))))....))))))......(((((((.((....)))))))))........ ( -24.50) >DroSec_CAF1 283 93 + 1 AUAAAGGUAAAUAAUUUAUGCUACUUUAUUUGCAUUGCCACCGCAGAACUUUUACCGGUUAAGGCGUGCGCACACUUGGCACGCCGAUUUAGU .....((((((.......(((..........)))((((....))))....))))))......(((((((.((....)))))))))........ ( -24.50) >DroSim_CAF1 152 93 + 1 AUAAAGGUAAAUAAUUUAUGCUACUUUAUUUGCAUUGCCACCGCAGAACUUUUACCGGUUAAGGCGUGCGCACACUUGGCACGCCGAUUUAGC .....((((((.......(((..........)))((((....))))....))))))......(((((((.((....)))))))))........ ( -24.50) >DroEre_CAF1 327 92 + 1 AUAAAGGUAAAUAAUUUAUGCUACC-UAUUUGCACUGUCACCGAAGAACUUUUACCGGCUAAGGCGUGCGCACACUUGGCACAACGACUUUGC ....(((((.(((...)))..))))-)....(((..(((.(((............))).......((((.((....))))))...)))..))) ( -17.40) >DroYak_CAF1 160 92 + 1 AUAAAGGUAAAUAAUUUAUGCUACU-UAUUUGCACUGCUACCGCAGAAGUUUUACCGGUGAAGGCGUGCGCACACUUGGCACACCGAUUUGGC .....((((((.......(((....-.....)))((((....))))....))))))......((.((((.((....)))))).))........ ( -22.10) >consensus AUAAAGGUAAAUAAUUUAUGCUACUUUAUUUGCAUUGCCACCGCAGAACUUUUACCGGUUAAGGCGUGCGCACACUUGGCACGCCGAUUUAGC .....((((((.......(((..........)))((((....))))....))))))......(((((((.((....)))))))))........ (-20.92 = -21.32 + 0.40)
| Location | 19,553,143 – 19,553,236 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 92.57 |
| Mean single sequence MFE | -24.24 |
| Consensus MFE | -21.48 |
| Energy contribution | -21.60 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.89 |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.891040 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19553143 93 - 20766785 GAUAAAUCGGCGUGCCAAGUGUGCGCACGCCUUAACCGGUAAAAGUUCUGCGGUGGCAAUGCAAAUAAAGUAGCAUAAAUUAUUUACCUUUAU ........(((((((((....)).)))))))......((((((.....(((....)))((((..........))))......))))))..... ( -24.70) >DroSec_CAF1 283 93 - 1 ACUAAAUCGGCGUGCCAAGUGUGCGCACGCCUUAACCGGUAAAAGUUCUGCGGUGGCAAUGCAAAUAAAGUAGCAUAAAUUAUUUACCUUUAU ........(((((((((....)).)))))))......((((((.....(((....)))((((..........))))......))))))..... ( -24.70) >DroSim_CAF1 152 93 - 1 GCUAAAUCGGCGUGCCAAGUGUGCGCACGCCUUAACCGGUAAAAGUUCUGCGGUGGCAAUGCAAAUAAAGUAGCAUAAAUUAUUUACCUUUAU ........(((((((((....)).)))))))......((((((.....(((....)))((((..........))))......))))))..... ( -24.70) >DroEre_CAF1 327 92 - 1 GCAAAGUCGUUGUGCCAAGUGUGCGCACGCCUUAGCCGGUAAAAGUUCUUCGGUGACAGUGCAAAUA-GGUAGCAUAAAUUAUUUACCUUUAU ((.(((.(((.(((((....).))))))).))).)).((((((.((((....).))).((((.....-....))))......))))))..... ( -22.50) >DroYak_CAF1 160 92 - 1 GCCAAAUCGGUGUGCCAAGUGUGCGCACGCCUUCACCGGUAAAACUUCUGCGGUAGCAGUGCAAAUA-AGUAGCAUAAAUUAUUUACCUUUAU ........(((((((((....)).)))))))......((((((....((((....))))(((.....-....))).......))))))..... ( -24.60) >consensus GCUAAAUCGGCGUGCCAAGUGUGCGCACGCCUUAACCGGUAAAAGUUCUGCGGUGGCAAUGCAAAUAAAGUAGCAUAAAUUAUUUACCUUUAU ........(((((((((....)).)))))))......((((((.....(((....)))((((..........))))......))))))..... (-21.48 = -21.60 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:46 2006