Locus 6214

Sequence ID 2R_DroMel_CAF1
Location 19,553,003 – 19,553,097
Length 94
Max. P 0.963919
window9952

overview

Window 2

Location 19,553,003 – 19,553,097
Length 94
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 89.26
Mean single sequence MFE -32.10
Consensus MFE -26.66
Energy contribution -26.14
Covariance contribution -0.52
Combinations/Pair 1.17
Mean z-score -2.01
Structure conservation index 0.83
SVM decision value 1.56
SVM RNA-class probability 0.963919
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19553003 94 - 20766785
AGGGACGGAUAUACUGUCAGCUGAAGGUGGGCAGUUAUGUCUGCCAGUCAGUUACAUACGCACA--------UAUGUACAUCAGUGAGGUACAGGGUGCCUC
...(((((.....)))))((((((.((..((((....))))..))..))))))......((((.--------..(((((.((...)).)))))..))))... ( -33.80)
>DroSec_CAF1 143 94 - 1
AGGGACGGAUAUACUGUCAGCUGAAGGUGGGCAGUUAUGUCUGCUAGUCAGUUACAUACGCACA--------UAUGUACAUCAAUGAGGUACAGGGUGCCUC
...(((((.....)))))((((((.((..((((....))))..))..))))))......((((.--------..(((((.((...)).)))))..))))... ( -31.90)
>DroSim_CAF1 12 94 - 1
AGGGACGGAUAUACUGUCAGCUGAAGGUGGGCAGUUAUGUCUGCUAGUCAGUUACAUACGCACA--------UAAGUACAUCAGUGAGGUACAGGGUGCCUC
...(((((.....)))))((((((.((..((((....))))..))..))))))......((((.--------...((((.((...)).))))...))))... ( -29.00)
>DroEre_CAF1 179 102 - 1
AGGGACAGCUAUAUUGUCAGCUGAAAGUGGGCAGUUAUGUCUGCCAGUCAGUUACAUACGCACACAUGUACGUACGUACAUCAGUAAGGUACAGGGUGCCUC
...(((((.....)))))((((((.....(((((......)))))..))))))......((((...(((((.(((........)))..)))))..))))... ( -32.80)
>DroYak_CAF1 12 102 - 1
AGGGACGGCAAUACUGUCAGCUGAAAGUGGGCAGUUAUGUCUGCCAGUCAGUUACAAGCGCACACACGUACAUAUGUACAUCAGUGAGGUAUAGGGUGCCUC
...(((((.....))))).(((((..((((((((......))))).((..((.....))..)).)))((((....)))).)))))(((((((...))))))) ( -33.00)
>consensus
AGGGACGGAUAUACUGUCAGCUGAAGGUGGGCAGUUAUGUCUGCCAGUCAGUUACAUACGCACA________UAUGUACAUCAGUGAGGUACAGGGUGCCUC
...(((((.....)))))((((((.....(((((......)))))..))))))................................(((((((...))))))) (-26.66 = -26.14 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:44 2006