Locus 6212

Sequence ID 2R_DroMel_CAF1
Location 19,544,863 – 19,544,968
Length 105
Max. P 0.875268
window9949

overview

Window 9

Location 19,544,863 – 19,544,968
Length 105
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 76.61
Mean single sequence MFE -23.84
Consensus MFE -14.20
Energy contribution -14.32
Covariance contribution 0.12
Combinations/Pair 1.35
Mean z-score -1.82
Structure conservation index 0.60
SVM decision value 0.89
SVM RNA-class probability 0.875268
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19544863 105 - 20766785
UAUGUCUUA----------UCCAUUGCU---UCCAUCUCAGCUACCUCUGCUCGUGGAAAGCAAUCCUCUCAUCUCCAUUGAGAUCUUGCUAAGACUGAUGACGACCUCCGACAUAAC
...((((((----------...((((((---(((((...(((.......))).)))).)))))))..(((((.......)))))......))))))..(((.((.....)).)))... ( -24.70)
>DroSec_CAF1 2893 107 - 1
UAUGUCUUA----------UCCGU-GCUUUCUCCAUCUCAGCUACCUCUGCUCGUGGAAAAGAAUCCUCUGAUCUCCAUUGAGAUCCUGCUAAGACUGAUGACGACCUCCGACAUAAC
(((((((((----------((.((-.((((.(((((...(((.......))).)))))))))........((((((....))))))........)).))))).(.....))))))).. ( -23.30)
>DroSim_CAF1 3711 107 - 1
UAUGUCUUA----------UCCGU-GCUUUCUCCAUCUCAGCUACCUCUGCUCGUGGAAAAGAAUCCUCUGAUCUCCAUUGAGAUCCUGCUAAGACUGAUGACGACCUCCGACAUAAC
(((((((((----------((.((-.((((.(((((...(((.......))).)))))))))........((((((....))))))........)).))))).(.....))))))).. ( -23.30)
>DroEre_CAF1 2907 117 - 1
UAUGAUCUAUAACCGUGCAUCCUU-GCUUUCUUCACCGCAGCUGCCUCUGCUCGUGGAGAACAAUCCUGUGAUCUCUAUCGAGAUUCUGCUAAGACUGAUGACGACUUCAGACAUAAC
((((.(((.....(((.(((((((-((.((((((((.((((......))))..)))))))).........((((((....))))))..)).)))...))))))).....))))))).. ( -29.80)
>DroYak_CAF1 3706 117 - 1
UAUGUCUCAUAACCGUGCAUCCUU-GUUUUUUCCACCUCAGCUGCCUCUGCUCGUGGAAAACAAUCCUCUGAUCUCCAUCGAGAUUCUGCUACGACUGAUGACGACCUCUGACAUAAC
((((((.......(((.((((.((-((.((((((((...(((.......))).)))))))).........((((((....)))))).....))))..)))))))......)))))).. ( -28.22)
>DroPer_CAF1 2345 91 - 1
AAUGUCUUU---------------------------UAUAGCUUCCCCUGCUGGUUGAAAACAAUCCACUCAUUUCCAUCGAAAUCUUAUUAAGACUGAUGAUGACCUCGGAUAUUAC
..(((.(((---------------------------..((((.......))))...))).)))((((..((((...(((((...(((.....))).)))))))))....))))..... ( -13.70)
>consensus
UAUGUCUUA__________UCCGU_GCUUUCUCCAUCUCAGCUACCUCUGCUCGUGGAAAACAAUCCUCUGAUCUCCAUCGAGAUCCUGCUAAGACUGAUGACGACCUCCGACAUAAC
((((((.........................(((((...(((.......))).)))))............((((((....))))))........................)))))).. (-14.20 = -14.32 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:41 2006