Locus 6210

Sequence ID 2R_DroMel_CAF1
Location 19,542,293 – 19,542,385
Length 92
Max. P 0.811761
window9946

overview

Window 6

Location 19,542,293 – 19,542,385
Length 92
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 92.85
Mean single sequence MFE -28.83
Consensus MFE -26.76
Energy contribution -26.57
Covariance contribution -0.19
Combinations/Pair 1.12
Mean z-score -1.20
Structure conservation index 0.93
SVM decision value 0.65
SVM RNA-class probability 0.811761
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19542293 92 - 20766785
CCGUCACCGGAGUGCUGGGGAAGCCGCUCUGGAUUAGCUUCCUGUGCAGUUCCUUGUCGCUCAAACUGUUCAAACUCUCGGUUGACAUUUUU-
..(((((((((((..(((((((((............)))))))..((((((...((.....)))))))).)).)))).))).))))......- ( -28.30)
>DroSec_CAF1 335 92 - 1
CCGUCACCGGAGUGCUGGGGAAGCCGCUCUGGAUUAGCUUCCUGUGCAGCUCCUUGUCGCUCAAACUGUUCAAACUCUCGGUUGACAUUUUU-
..((((((((((((.((((((.((.((.(.(((......))).).)).)))))))).))))).....((....))...))).))))......- ( -30.70)
>DroSim_CAF1 1153 92 - 1
CCGUCACCGGAGUGCUGGGGAAGCCGCUCUGGAUUAGCUUCCUGUGCAGCUCCUUGUCGCUCAAACUGUUCAAACUCUCGGUUGACAUUUUU-
..((((((((((((.((((((.((.((.(.(((......))).).)).)))))))).))))).....((....))...))).))))......- ( -30.70)
>DroEre_CAF1 348 92 - 1
CCGUCACCGGAGUGCUGGGGAAGCCGCUCUGGAUAAGCUUUCUGUGCAGCUCCUUGUCGCUCAAACUGUUCAAGCUCUCGGUUGACAUUUUU-
..((((((((((((.((((((.((.((.(.(((......))).).)).)))))))).)))))...((.....))....))).))))......- ( -28.50)
>DroYak_CAF1 1147 92 - 1
CCGUCACCGGAGUGCUGGGGAAGCCGCUCUGGAUUAGCUUUCUAUGCAGCUCCUUGUCGCUCAAACUGUUCAAGCUCUCGGUUGACAUUUUU-
..((((((((((((.((((((.((.((..((((.......)))).)).)))))))).)))))...((.....))....))).))))......- ( -28.30)
>DroAna_CAF1 1289 93 - 1
CGGUCACCGGCGUGUUGGGGAAGCCGCUCUGGAUCAGUUUCCUGUGCAAUUCCAAGUCGCUAAGACUGUUUAAGCUCUCGGUUGACAUCUUUG
..((((((((.(.(((..((((...((.(.(((......))).).))..)))).((((.....)))).....))).))))).))))....... ( -26.50)
>consensus
CCGUCACCGGAGUGCUGGGGAAGCCGCUCUGGAUUAGCUUCCUGUGCAGCUCCUUGUCGCUCAAACUGUUCAAACUCUCGGUUGACAUUUUU_
..((((((((((((.(..(((.((.((...(((......)))...)).)))))..).))))).....((....))...))).))))....... (-26.76 = -26.57 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:37 2006