Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,142,762 – 3,142,857 |
Length | 95 |
Max. P | 0.500000 |
Location | 3,142,762 – 3,142,857 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 85.85 |
Mean single sequence MFE | -25.72 |
Consensus MFE | -18.52 |
Energy contribution | -18.96 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.23 |
Mean z-score | -1.56 |
Structure conservation index | 0.72 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3142762 95 - 20766785 UUAAGAUGCCAUUGAAAAGGUGACGAAAGGCCAACAAUUGAGGGGCGUUGUUAGCCAU-GGCCAAUUGUUAUUGCCAAUUUGUGACGCUUUUUAAG ...........((((((((((.(((((.(((.((((((((...(((.......)))..-...))))))))...)))..))))).)).)))))))). ( -27.60) >DroSec_CAF1 32575 94 - 1 UUAAGAUGCCAUUGAAAAGGUGACGAAAGGCCAACAAUUGUG-GGCGUUGUUAGCCAU-GGCCAGUUGUUAUUGCCAAUUUGUGACGCUUUUUAAG ...........((((((((((.(((((.(((.((((((((..-(((.......)))..-...))))))))...)))..))))).)).)))))))). ( -27.20) >DroEre_CAF1 32368 95 - 1 UUAAGUUUCCAUUGAAAAGGUGACGAAAGAAGAACAAUUGAGGGGCGUUCUUAGUCAU-GGCCAAUUGUUACUGCCAAUUUGUGACGCUUUUUAAG ...........((((((((((.(((((...((((((((((...(((.......)))..-...)))))))).)).....))))).)).)))))))). ( -21.90) >DroYak_CAF1 32997 95 - 1 UUAAGUUGCCAUUGAAAAGGCGACGAAGGGAGAACAAAUGAGGGGCGUUGUUAGUCAU-GGCCAAUUGUUAUUGCCAAUUUGUGACGCUUUUUAAG ....((((((........))))))..............((((((((((..(.(((..(-(((.(((....)))))))))).)..)))))))))).. ( -27.30) >DroAna_CAF1 31730 94 - 1 UUAAGCCGCCAUUGAGUA-GUGACGAAAGGCAAACAAUCGAUUGG-GUUGUUAGCUUCGGGCUAAUUGUUAUUGUCGAUUCGUGACGCUUUUUAAC ..(((((((.(((((.((-(((((((..(((.(((((((.....)-))))))..(....))))..))))))))))))))..)))..))))...... ( -24.60) >consensus UUAAGAUGCCAUUGAAAAGGUGACGAAAGGCCAACAAUUGAGGGGCGUUGUUAGCCAU_GGCCAAUUGUUAUUGCCAAUUUGUGACGCUUUUUAAG ...........((((((((((.(((((.(((.((((((........)))))).)))...(((.(((....))))))..))))).)).)))))))). (-18.52 = -18.96 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:59 2006