Locus 6205

Sequence ID 2R_DroMel_CAF1
Location 19,535,186 – 19,535,293
Length 107
Max. P 0.768117
window9935

overview

Window 5

Location 19,535,186 – 19,535,293
Length 107
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 84.52
Mean single sequence MFE -24.74
Consensus MFE -17.50
Energy contribution -17.66
Covariance contribution 0.16
Combinations/Pair 1.13
Mean z-score -1.96
Structure conservation index 0.71
SVM decision value 0.52
SVM RNA-class probability 0.768117
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19535186 107 - 20766785
GGGUCUAGUCGUAAUCUUGUGAAUGUUU-UUUCUAAGACCUUAAUUGUGCUUAGAUUAAUCAUCGUUCUAGUAGCAGGAGGCUAGACUUAAGUGCUACAUUUGUCAUA
((((((((((....(((((((((((.((-..((((((..(......)..))))))..))....))))).....))))))))))))))))................... ( -27.10)
>DroSec_CAF1 573 88 - 1
GGGUCUAGUCGUAAUCUUGUGAAUUU-U-UUUCUAAGACCUUAAUUGUGCUUAGAUUAAUCAUCGUUCUAGUAGCAGGAGGCUAG------------------UCAUA
..(.((((((....(((((.(((...-.-.))))))))......((.((((((((...........))))..)))).))))))))------------------.)... ( -19.40)
>DroSim_CAF1 572 107 - 1
GGGUCUAGUCGUAAUCUUGUGAAUUUUU-UUUCUAAGACCUUAAUUGUGCUUAGAUUAAUCAUCGUUCUAGUAGCAGGAGGCUAGACUUAAGUGCUACAUUUGUCAUA
((((((((((....(((((.(((.....-.))))))))......((.((((((((...........))))..)))).))))))))))))................... ( -24.60)
>DroEre_CAF1 570 100 - 1
GGGUCUAGUCGUAAUUUUGUGAAUAUUUUUUUCUAAGACCUUAAUUGUUCUUAGAUUAAUCAUCAUUAUAGUCGCAAGAGACUAGACU--------ACAUUUGUCAUA
.(((((((((....((((((((.(((.((..(((((((.(......).)))))))..))........))).)))))))))))))))))--------............ ( -26.60)
>DroYak_CAF1 576 107 - 1
GGGUCUAGUCGUAAUCUUGUGAAUGUUU-UUUCUAAGACCUUAAUUGUUCUUAGAUUAAUCAUCUUAUAAGAAGCAAGAGAGUAGACUAAAGUGCUACGUUUGUCAUA
.((((((.((....(((((((((((.((-..(((((((.(......).)))))))..)).))).)))))))).......)).)))))).................... ( -26.00)
>consensus
GGGUCUAGUCGUAAUCUUGUGAAUGUUU_UUUCUAAGACCUUAAUUGUGCUUAGAUUAAUCAUCGUUCUAGUAGCAGGAGGCUAGACU_AAGUGCUACAUUUGUCAUA
.(((((((((....((((((...........((((((..(......)..))))))........(......)..))))))))))))))).................... (-17.50 = -17.66 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:26 2006