| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,529,161 – 19,529,274 |
| Length | 113 |
| Max. P | 0.527335 |
| Location | 19,529,161 – 19,529,274 |
|---|---|
| Length | 113 |
| Sequences | 3 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 87.54 |
| Mean single sequence MFE | -24.19 |
| Consensus MFE | -17.04 |
| Energy contribution | -17.27 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.70 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.527335 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19529161 113 - 20766785 GCUAACGAGUAUCUGAAGAUACACAUUCAUUGGGAAUUUAUACGCACAUACAUGUAUGUACAUGCUUAUAUGUGCCUCCCACCAUGCAAAGAGUGAAAUAUUUAGCAACCCAA (((((...(((((....))))).(((((.(((.(.........((((((((((((....)))))....))))))).........).))).)))))......)))))....... ( -27.67) >DroSim_CAF1 192 111 - 1 GCUAACGAGUAUGUGAAGAUACAAAUUCAUUGGGAAUUUCUACGUGCAUACAU--AUGUACAUGCUUAUAUGUGCCUCCCACCAUAAAAAGAGUGAAAUAUGUAGCAACCCAA ......((((.((((....)))).)))).(((((.........((((((....--)))))).((((.((((((..(((............)))....)))))))))).))))) ( -24.20) >DroEre_CAF1 191 103 - 1 GCUAACGCGUAUCUAAAGAUACACAUUCAUCGGGAAUUUAUACGUACAUAC----------AUGCUUAUAUGUGCCUCCCACCAUACAAAGAGUGAAAUAUGUAGCAACCCAA ((....))(((((....))))).........(((......((((((((((.----------.......)))))))....((((.......).)))......)))....))).. ( -20.70) >consensus GCUAACGAGUAUCUGAAGAUACACAUUCAUUGGGAAUUUAUACGUACAUACAU__AUGUACAUGCUUAUAUGUGCCUCCCACCAUACAAAGAGUGAAAUAUGUAGCAACCCAA ((((....(((((....)))))...((((((((((........(((((((..................))))))).)))))...........))))).....))))....... (-17.04 = -17.27 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:23 2006