Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,316,037 – 1,316,156 |
Length | 119 |
Max. P | 0.586117 |
Location | 1,316,037 – 1,316,156 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.03 |
Mean single sequence MFE | -35.06 |
Consensus MFE | -23.86 |
Energy contribution | -23.98 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.22 |
Mean z-score | -2.17 |
Structure conservation index | 0.68 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.586117 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1316037 119 + 20766785 GCUUGGCAUGUGGAAAAGAGCUCUUUUGUUUUUUCGGGGAGCACUUCCUGCUGUCUCUUUUCGCAU-UACUUAGUGUUUUUAUUGAAGCAAUUCUGUCAGGGCAGAAAACAACAGGCUGA (((((((((((((((((((((......))))))..((((((((.....)))).)))).))))))))-...((((((....)))))).))..((((((....)))))).....)))))... ( -32.20) >DroSec_CAF1 34434 119 + 1 GCUUGGCAUGUGGAAAAGAGCUGUUUUGUUUUUUCAGGCAGGACUUCCUGCUGUCUCUUUUCGCAU-UACUUAGUGUUUUUAUUGAGGCAAUUCUGUCAGGGCAGAAAACAACAGGCUGA ((((((((((((.((((((((((...........)))(((((....)))))...))))))))))))-..(((((((....)))))))))..((((((....)))))).....)))))... ( -40.20) >DroSim_CAF1 13383 119 + 1 GCUUGGCAUGUGGAAAAGAGCUCUUUUGUUUUUUCAGGCAGCACUUCCUGCUGUCUCUUUUCGCAU-UACUUAGUGUUUUUAUUGAGGCAAUUCUGUCAGGGCAGAAAACAACAGGCUGA (((((((((((((((((((((......))))))..((((((((.....))))))))..))))))))-..(((((((....)))))))))..((((((....)))))).....)))))... ( -39.50) >DroEre_CAF1 16819 119 + 1 GCUUGGCAUGUGGAAAAGGGCUCUUUUGUUUUUUUUGGGAGCACUUCCUGCUGUCUGUUUUCGCAU-UACUUAGUGUUUUUAUUGAAGCAAUUCUGUCAGGGCAGAAGACAACAGUCUGA ....((((...((((....((((((..(.....)..))))))..))))))))(.(((((.((....-.......((((((....)))))).((((((....)))))))).))))).)... ( -30.20) >DroYak_CAF1 3879 106 + 1 GCUUGGCAUGUGGAAAAGAGC--------------AGGGAGCACUUCUUUCUGUUUCUUUUCGCAUUUACUUAGUGCUUUUAUUGAAGCAAUUCUGUCAAGGCAGAAAACAACAGUUUGA .(((((((((((((((..(((--------------((..((.....))..)))))..)))))))).........((((((....))))))....))))))).....((((....)))).. ( -33.20) >consensus GCUUGGCAUGUGGAAAAGAGCUCUUUUGUUUUUUCAGGGAGCACUUCCUGCUGUCUCUUUUCGCAU_UACUUAGUGUUUUUAUUGAAGCAAUUCUGUCAGGGCAGAAAACAACAGGCUGA (((((..(((((.((((((((.............((((((....))))))..).))))))))))))........((((((....)))))).((((((....)))))).....)))))... (-23.86 = -23.98 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:13 2006