Locus 6198

Sequence ID 2R_DroMel_CAF1
Location 19,516,965 – 19,517,067
Length 102
Max. P 0.721109
window9923

overview

Window 3

Location 19,516,965 – 19,517,067
Length 102
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 81.69
Mean single sequence MFE -42.73
Consensus MFE -26.64
Energy contribution -26.04
Covariance contribution -0.61
Combinations/Pair 1.30
Mean z-score -2.13
Structure conservation index 0.62
SVM decision value 0.40
SVM RNA-class probability 0.721109
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19516965 102 - 20766785
CAAGCCCAUCGAGCUGAAAGACAUUGUGGGCUACAGCGAGUCGCUCCGGGACGGUGACACCGCUCCCGCGGGUGGAUCGCCGGGCCGCCAGCAGGGCUACUC
..(((((.....((((.....(.....)((((...((((..(((((((((((((.....))).))))).)))))..))))..))))..)))).))))).... ( -46.70)
>DroPse_CAF1 13926 96 - 1
CAGACCCAUAGAGCUCAAAGAUAUCGUUGGCUACAGCGAAUCCCUUCAGGAUAGCGACACUGCGC---CGAGGGGUUCGCAGGGCCGA---CAGGGAUACAC
....(((...((.(.....)...))(((((((...(((((((((((..((...(((....))).)---))))))))))))..))))))---).)))...... ( -39.70)
>DroEre_CAF1 13770 102 - 1
CAAGCCCAUCGAGCUGAAAGACAUUGUUGGCUACAGCGAGUCCCUCCGAGACGGCGACACCGCUCCUCCGGGGGGAUCGCAGGGCCGCCAGCAGGGGUACAC
...((((.....((((...(((...)))((((...((((.((((((((.((.((((....))).).))))))))))))))..))))..))))..)))).... ( -44.10)
>DroYak_CAF1 13655 102 - 1
CAAGCCCAUCGAGCUGAAAGACAUUGUUGGCUACAGCGAGUCCCUCCGCGAUGGAGACACCGCUCCUCCGGGGGGAUCGCAGGGCCGCCAGCAGGGGUACAC
...((((.....((((...(((...)))((((...((((.((((((((.((.((((......))))))))))))))))))..))))..))))..)))).... ( -46.00)
>DroAna_CAF1 14372 99 - 1
CAAGCCCAUCGAACUGAAAGACAUUGUCGGCUACAGCGAAUCCCUGGUGGAUAGCGACACCGUGC---CGGGGGGUUCGCAGGGCCGAUCGCCGGGGUACAC
...((((..(((..((.....))...((((((...((((((((((..(((...(((....))).)---))))))))))))..)))))))))...)))).... ( -40.20)
>DroPer_CAF1 14028 96 - 1
CAGACCCAUAGAGCUCAAAGAUAUCGUUGGCUACAGCGAAUCCCUUCAGGAUAGCGACACUGCGC---CGAGGGGUUCGCAGGGCCGA---CAGGGAUACAC
....(((...((.(.....)...))(((((((...(((((((((((..((...(((....))).)---))))))))))))..))))))---).)))...... ( -39.70)
>consensus
CAAGCCCAUCGAGCUGAAAGACAUUGUUGGCUACAGCGAAUCCCUCCGGGAUAGCGACACCGCGC___CGGGGGGAUCGCAGGGCCGACAGCAGGGGUACAC
....(((....(((...........)))((((...((((.((((((.......(((....)))......)))))).))))..)))).......)))...... (-26.64 = -26.04 +  -0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:15 2006