Locus 6196

Sequence ID 2R_DroMel_CAF1
Location 19,514,586 – 19,514,694
Length 108
Max. P 0.571759
window9920

overview

Window 0

Location 19,514,586 – 19,514,694
Length 108
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 85.06
Mean single sequence MFE -33.37
Consensus MFE -26.38
Energy contribution -28.02
Covariance contribution 1.64
Combinations/Pair 1.15
Mean z-score -1.78
Structure conservation index 0.79
SVM decision value 0.08
SVM RNA-class probability 0.571759
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19514586 108 - 20766785
ACCGACGCAGGAACCUACUCCUGCAAGGCCACCAAUAAGCAUGGUGAAGCCAACUGCGAGGCUAUCGCCACCACAGUGGGUAAGUCAAGUCCAGAUAGUCCCAUAAAU
......((((((......))))))..((((((((.......))))).((((........))))...)))......(((((...(((.......)))...))))).... ( -34.20)
>DroSec_CAF1 11238 108 - 1
ACCGACGCAGGAACCUACUCCUGCAAGGCCACCAAUAAGCAUGGUGAAGCUAACUGCGAGGCUAUCGCCACCACAGUGGGUGAGUAAAGUUCAGGUAGUCCAAGAAAU
.((...((((((......))))))..)).(((((.......)))))..((.....))(.(((((((.((((....)))).((((.....))))))))))))....... ( -32.60)
>DroSim_CAF1 11978 108 - 1
ACCGACGCAGGAACCUACUCCUGCAAGGCCACCAAUAAGCAUGGUGAAGCUAACUGCGAGGCUAUCGCCACCACAGUGGGUGAGUCAAGUUCAGGUAGUCCAAUAAAU
((((((((((((......))))))..(((((((........((((((((((........)))).))))))........)))).)))..)))..)))............ ( -35.29)
>DroEre_CAF1 11418 108 - 1
ACCGACGCAGGAACCUACUCCUGCAAGGCCACCAAUAAGCACGGAGAAGCCAACUGCGAGGCUAUUGCCACCACAGUGGGUGAGUCAUAUUUAAAUAGACCGAUCAAU
..((..((((((......))))))..(((((((.........((.....)).((((.(.(((....)))..).)))).)))).)))..............))...... ( -30.30)
>DroYak_CAF1 11268 108 - 1
ACCGACGCGGGAACCUACUCCUGCAAGGCCACCAACAAGCACGGCGAAGCCAACUGCGAGGCUGUCGCCACCACAGUGGGUGAGUCCCAUAAAGAUUGUCCAAUAAAU
...(((((((((......))))))..(((((((.((......(((((((((........)))).)))))......)).)))).)))...........)))........ ( -36.30)
>DroAna_CAF1 11991 106 - 1
UCGGAUGCUGGAACCUACACCUGCAAAGCCACGAAUAAGUUUGGAGAAGCCACUUGCGAGGCUGUGGCCACCACAGUGGGUGAGUCCUGG--AGAGUUUCCUUUAAAA
..(((.((((((..((.((((..(..((((.((..(((((..((.....))))))))).))))((((...)))).)..)))))))))...--..))).)))....... ( -31.50)
>consensus
ACCGACGCAGGAACCUACUCCUGCAAGGCCACCAAUAAGCAUGGUGAAGCCAACUGCGAGGCUAUCGCCACCACAGUGGGUGAGUCAAGUUCAGAUAGUCCAAUAAAU
...(((((((((......))))))..(((((((........((((((((((........)))).))))))........)))).)))...........)))........ (-26.38 = -28.02 +   1.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:11 2006