| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,506,224 – 19,506,328 |
| Length | 104 |
| Max. P | 0.824897 |
| Location | 19,506,224 – 19,506,328 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 72.66 |
| Mean single sequence MFE | -24.06 |
| Consensus MFE | -15.36 |
| Energy contribution | -15.62 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.824897 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19506224 104 - 20766785 UACACAGGA-A---UAGUGCCAUA-GUUAAACCACAUCGAUCUUCUUUUUUUUUUAAAUACUUCAGAUCAAGGAUCUGCUGAUCUCCGUGGUCGGCGGUGAUAUCAUCA .........-.---....(((...-.....(((((...(((((.....(((....)))......)))))..(((((....)))))..))))).)))((((....)))). ( -20.50) >DroSec_CAF1 2935 99 - 1 UACAUAGCA-A---GAGUGCCAUA-GUUUAACCACCUCGACCUU-----UUCUUGCAUUACUGCAGAUCAAGGAUCUUCUGAUCUCCGUGGUCGGCGGUGAUAUCAUCA ......(((-(---(((.......-...................-----)))))))((((((((.(((((.(((((....)))))...))))).))))))))....... ( -28.37) >DroSim_CAF1 3493 99 - 1 UACAUAGCA-A---CAGUGCCAUC-GUUUAACCACCUCGAUCUU-----UCCUUGCAUUACUGCAGAUCAAGGAUCUUCUGAUCUCCGUGGUCGGCGGUGAUAUCAUCA ......(((-.---...)))((((-(.(..(((((...((((..-----((((((.(((......)))))))))......))))...)))))..))))))......... ( -26.20) >DroEre_CAF1 2944 103 - 1 UAGGGAACU-AGUCUAGUGCCAUUGGUUCAACUAACACGUUCUU-----UUCUUGCAAUAUUGCAGAUCAAGGAUCUGCUGAUCUCCGUGGUCGGCGGUGAUUUCAUCA (((.(((((-(((........))))))))..)))....((((((-----.(((.(((....))))))..))))))..(((((((.....)))))))((((....)))). ( -27.80) >DroWil_CAF1 2943 95 - 1 UAGCCUAAAUAGAGUA-UUUCUUA-UUUUAAUC---UUGAUCAU-----UUUAU----AUUUACAGAUCAAGGACUUGCUUAUUUCAAUUGUCGGAGGCGAUCACAUUA ..((((...(((((((-.....))-)))))..(---((((((..-----.....----.......)))))))(((...............)))..)))).......... ( -17.30) >DroYak_CAF1 2948 96 - 1 CAGAGA--------UAGUGCCAUAAGUUCAACCACCUCAAACUU-----UUCUUGCCAUAUUGCAGAUCAAGGAUCUGUUGAUCUCCGUGGUCGGCGGUGAUAUCAUCA ..((((--------((..(((..(((((...........)))))-----.....(((.....(((((((...))))))).((((.....))))))))))..)))).)). ( -24.20) >consensus UACACAGCA_A___UAGUGCCAUA_GUUUAACCACCUCGAUCUU_____UUCUUGCAAUACUGCAGAUCAAGGAUCUGCUGAUCUCCGUGGUCGGCGGUGAUAUCAUCA ..................(((................................(((......)))(((((.(((((....)))))...))))))))((((....)))). (-15.36 = -15.62 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:10 2006