| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,498,940 – 19,499,060 |
| Length | 120 |
| Max. P | 0.597497 |
| Location | 19,498,940 – 19,499,060 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.89 |
| Mean single sequence MFE | -44.12 |
| Consensus MFE | -23.70 |
| Energy contribution | -23.95 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.597497 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19498940 120 - 20766785 CAGAUUCGGAUUGGCCUCGUGGGCCUUGCACGGCACUAUCCACGAGAAACUGAAAGUAGAGGGAUUCACCUCCUGGGUGAGCCAUGGAUCUGUGAUUAACUGGUGCAUGGUGCACCGGUA ((((((((...((((((((((((((......))).....)))))))...................(((((.....)))))))))))))))))......((((((((.....)))))))). ( -48.20) >DroPse_CAF1 6186 120 - 1 AGUGUCCGGUUCUGCCUCAUGCGCCUUGCAUGGAACAAUCCAUGCAAAAUUAAAGUGCGCAGAAUUGACUUCUUGCGUGAGCCAGGGAUCGUUUACUAGCUGCAGCAUUGUGCAGCGGUA ((((..(((((((..(((((((((.(((((((((....))))))))).......))))((((((.....))).))))))))...)))))))..)))).((((((......)))))).... ( -46.60) >DroEre_CAF1 11185 120 - 1 CAGGUCCGGAUUGGCCUCGUGGGCCUUGCAUGGCACUAUCCACGAGAAACUGAAAGCCGAGGGAUUCACCUCCUGGGUGAGCCAGGGAUCGGUGAUUAACUGAUGCAUGGUGCAGCGGUA ...((((...(((((((((((((((......))).....))))))).........))))).))))(((((((((((.....))))))...)))))...((((.(((.....))).)))). ( -44.70) >DroYak_CAF1 11357 120 - 1 CAGAUCCGGAUUGGCCUCGUGCGCCUUGCACGGCACUAUCCACGAGAAACUGAAAGCCGAGGGAUUCACCUCCUGGGUCAGCCAGGGAUCGGUGAUUAACUGGUGCAUGGUGCAGCGGUA .....(((.........(((((.....)))))(((((((.(((.((....(((..(((((((......))((((((.....)))))).)))))..))).)).))).)))))))..))).. ( -43.60) >DroAna_CAF1 11515 120 - 1 UAAAUCCGGAUUGGCCUCGUGUGCCUUGCACGGAACAAUCCACGAAAAGUUAAACAUGCCGGCGUUGACUUCCUGCGUGAUCCAGGGAUCGGUUAUUAGCUGAUGCAUUGUACAUCGGUA .....((((((((..(.(((((.....))))))..))))))(((..(((((((.(.....)...)))))))....)))((((....))))))......(((((((.......))))))). ( -35.20) >DroPer_CAF1 6176 120 - 1 AGUGUCCGGUUCUGCCUCAUGCGCCUUGCAUGGAACAAUCCAUGCAAAAUUAAAGUGCGCAGAAUUGACUUCUUGCGUGAGCCAGGCAUCGUUUACUAGCUGCAGCAUUGUGCAGCGGUA ((((..((((((((.(((((((((.(((((((((....))))))))).......))))((((((.....))).)))))))).)))).))))..)))).((((((......)))))).... ( -46.40) >consensus CAGAUCCGGAUUGGCCUCGUGCGCCUUGCACGGAACAAUCCACGAAAAACUAAAAGCCGAGGGAUUCACCUCCUGCGUGAGCCAGGGAUCGGUGAUUAACUGAUGCAUGGUGCAGCGGUA .......((((.((..((((((.....))))))..))))))........................((((((((((.(....))))))...)))))...((((((((.....)))))))). (-23.70 = -23.95 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:09 2006