Locus 6190

Sequence ID 2R_DroMel_CAF1
Location 19,485,752 – 19,485,856
Length 104
Max. P 0.729648
window9911

overview

Window 1

Location 19,485,752 – 19,485,856
Length 104
Sequences 4
Columns 104
Reading direction forward
Mean pairwise identity 86.86
Mean single sequence MFE -21.11
Consensus MFE -14.74
Energy contribution -16.93
Covariance contribution 2.19
Combinations/Pair 1.07
Mean z-score -1.89
Structure conservation index 0.70
SVM decision value 0.42
SVM RNA-class probability 0.729648
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19485752 104 + 20766785
UGUACUGGCAUACAUAUAAUAUCUGAUAUUUACGUAUAAUAUUCAGAUUUUCCGCUCUCAAGACCGUUCGGAAUCGUCUGAAAUAAACAGAAGCCAGAUUCAUA
....(((((((((.((.(((((...))))))).))))....(((((((.(((((..(........)..)))))..)))))))..........)))))....... ( -23.60)
>DroSec_CAF1 2334 96 + 1
UGU--------ACAUAUUAUAUCUGAUAUUUACGUAUAAUAUUCAGAUUUUCUGCUCUCGAAACCGUUCGGAAUCGUCUGAAAUAAACAGAAGCCAGAUUUAUA
...--------.........((((((((((.......)))).))))))..((((((.((.......((((((....)))))).......)))).))))...... ( -16.04)
>DroSim_CAF1 2610 104 + 1
UGUACUGGCAUACAUAUUAUAUCUGAUAUUUACGUAUAAUAUUCAGAUUUUCCGCUCUCGAAACCGUUCGGAAUCGUCUGAAAUAAACAGAAGCCAGAUUUAUA
....(((((.....((((((((.(((...))).))))))))(((((((.(((((....((....))..)))))..)))))))..........)))))....... ( -26.70)
>DroYak_CAF1 2638 101 + 1
---AUAGCCAUGCAUAUAAUAUCAGAUAUUUACGUAUAAUAUUCAGAUUUUCCGCACUUAAAAGCGUUCGGAACCGUCUGAAAUAAACAGAAGACGGAUUGAUA
---................((((((........................(((((.((........)).)))))((((((............)))))).)))))) ( -18.10)
>consensus
UGUACUGGCAUACAUAUAAUAUCUGAUAUUUACGUAUAAUAUUCAGAUUUUCCGCUCUCAAAACCGUUCGGAAUCGUCUGAAAUAAACAGAAGCCAGAUUUAUA
....(((((.....((((((((.(((...))).))))))))(((((((.(((((..(........)..)))))..)))))))..........)))))....... (-14.74 = -16.93 +   2.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:02 2006