Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,137,530 – 3,137,623 |
Length | 93 |
Max. P | 0.644439 |
Location | 3,137,530 – 3,137,623 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 85.22 |
Mean single sequence MFE | -21.40 |
Consensus MFE | -14.15 |
Energy contribution | -14.65 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.16 |
Mean z-score | -1.78 |
Structure conservation index | 0.66 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.644439 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3137530 93 + 20766785 UUCCACACAUCC-----AGCCGGGUUUCACUCGAAACUCCA-AAGAAAUGACUUUGGCGGCCCGCAGGCCACCACUUU--UUGUUUCCCUUGUCCGAAACC ............-----.((((((((((....))))).))(-(((......)))))))((((....))))........--..(((((........))))). ( -22.80) >DroSec_CAF1 27545 89 + 1 UUCCACACAUCC-----AGCCGGAUUUCACUCGAAACUCUA-AAGAAAUGACUUCGGAGGCCCGCAGGCCACCACUUU--UUGUUUCCCUUGUCCGA---- ............-----...(((((.......(((((...(-(((....(....)((.((((....)))).)).))))--..)))))....))))).---- ( -21.00) >DroSim_CAF1 27978 93 + 1 UUCCACACAUCC-----AGCCGGAUUUCACUCGAAACUCUA-AAGAAAUGACUUCGGAGGCCCGCAGGCCACCACUUU--UUGUUUCCCUUGUCCGAAAUG ............-----...(((((.......(((((...(-(((....(....)((.((((....)))).)).))))--..)))))....)))))..... ( -21.00) >DroYak_CAF1 27785 100 + 1 UUCCACACAUCUCAGUUACCCGGUUUUUACUCAAAACUCAAAAAGAAAUGACUUCGGAGGCCCGCAGGCCU-UACUUUUUGCGUUUCCCUUGUCCAAAACC .....................((((((.((...((((.(((((((......(....)(((((....)))))-..))))))).)))).....))..)))))) ( -20.80) >consensus UUCCACACAUCC_____AGCCGGAUUUCACUCGAAACUCUA_AAGAAAUGACUUCGGAGGCCCGCAGGCCACCACUUU__UUGUUUCCCUUGUCCGAAACC ....................(((((.......(((((.......(((.....)))((.((((....)))).)).........)))))....)))))..... (-14.15 = -14.65 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:57 2006