| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,485,446 – 19,485,548 |
| Length | 102 |
| Max. P | 0.561488 |
| Location | 19,485,446 – 19,485,548 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 82.86 |
| Mean single sequence MFE | -25.25 |
| Consensus MFE | -17.05 |
| Energy contribution | -17.83 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.561488 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19485446 102 - 20766785 ACUUGCAUUUUCAUACAGUGUCAGGUAUAAAUAUCGGGUAAAGAACCAUGU----------------ACAUGCAGUGUACAUACGAGUAUGCAUGAUUUAAUUGUACUCGGACACACG .................(((((.((((....)))).(((.....)))((((----------------((((...)))))))).((((((((.((......)))))))))))))))... ( -24.60) >DroSec_CAF1 2033 101 - 1 ACUUGCAUUUUCAUACAGUGUCAGGUAUAAAUAUCGGUUAUAG-ACCAUGU----------------ACAUGCAGUGUACAUAUGAGUAUGCAUGAUUUAAUUGUACUCGGACACACG .................(((((.(((((((((((.((((...)-)))))))----------------.((((((...(((......)))))))))......)))))))..)))))... ( -24.00) >DroSim_CAF1 2309 101 - 1 ACUUGCAUUUUCAUACAGUGUCAGGUAUAAAUAUCGGUUAAAG-ACCAUGU----------------ACAUGCAGUGUACAUACGAGUAUGCAUGAUUUAAUUGUACUCGGACACACG .................(((((.((((....))))((((...)-)))((((----------------((((...)))))))).((((((((.((......)))))))))))))))... ( -25.10) >DroEre_CAF1 2175 102 - 1 ACUUGCAUUUUCAUACAGUGUCAGGUAAAAAUAUCGGUUAAAGAACCAUGU----------------ACAUGCAUUGUACAUACAAGUAUGCAUGAUUUAAUUGUGCUCCGACACACG .................(((((.((..........((((....))))((((----------------(((.....)))))))........(((..((...))..))).)))))))... ( -22.90) >DroYak_CAF1 2331 118 - 1 ACUUGCAUUUUCAUACAGUGUCAGGUAUUAAUAUCGGUUAAAGAACCAUGUACAUGUGUACGUAUGUACAUGCAUUGUACAUACGAGUAUGCAUGAUUUAAUUGUGCUCGGACACACG .................(((((.(((((..((((.((((....)))))))).((((((((((((((((((.....)))))))))..)))))))))........)))))..)))))... ( -35.50) >DroAna_CAF1 2387 109 - 1 ACUUGCAUUUUCAUACAGUGUCAGGUAUAAAUAUCGGUUAAAGAACAAUACUCACUCGCAUAU----AUAUA-AAUGUAUA----UGUUUGUAUGAUUUACUGAUGAUCGGGAACACG (((((((((.......)))).))))).....(((((((.(((.....((((......((((((----(((..-..))))))----)))..))))..))))))))))...(....)... ( -19.40) >consensus ACUUGCAUUUUCAUACAGUGUCAGGUAUAAAUAUCGGUUAAAGAACCAUGU________________ACAUGCAGUGUACAUACGAGUAUGCAUGAUUUAAUUGUACUCGGACACACG .................(((((.(((((((.....((((....)))).....................((((((...(((......)))))))))......)))))))..)))))... (-17.05 = -17.83 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:01 2006