Locus 6188

Sequence ID 2R_DroMel_CAF1
Location 19,476,843 – 19,476,935
Length 92
Max. P 0.845189
window9909

overview

Window 9

Location 19,476,843 – 19,476,935
Length 92
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 79.44
Mean single sequence MFE -30.77
Consensus MFE -18.22
Energy contribution -20.47
Covariance contribution 2.25
Combinations/Pair 1.17
Mean z-score -2.09
Structure conservation index 0.59
SVM decision value 0.77
SVM RNA-class probability 0.845189
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19476843 92 - 20766785
UGUCGAAGCUCCA---------GCUGCUCCCUCUCCCUUCCACUUACCAUUAAGUGGUCGUGAUCAAUGGGACGCAUUUGGCGAACUAAUCGCCAGUGAAU
......(((....---------)))((((((..((.(..(((((((....)))))))..).)).....)))).))..(((((((.....)))))))..... ( -28.00)
>DroSec_CAF1 69 92 - 1
UUUCGAAGCUCCA---------GCUGCUCCCGCUCCCGUCCACAUACCAUUAAGUGGUCGGGAUCAAUGGGACGCAUUUGGCGAACUAAUCGCCAGUGAAU
.((((.(((....---------)))(((((((.(((((.((((..........)))).)))))....))))).))..(((((((.....))))))))))). ( -35.60)
>DroSim_CAF1 69 92 - 1
UGUCGAAGCUCCA---------GCUGCUCCCGCUCCCGUCCACAUACCAUUAAGUGGUCGGGAUCAAUGGGACGCAUUUGGCGAACUAAUCGCCAGUGAAU
......(((....---------)))(((((((.(((((.((((..........)))).)))))....))))).))..(((((((.....)))))))..... ( -35.10)
>DroEre_CAF1 102 92 - 1
AAACGAAGCUCCC---------GCUGCUCCCGGUCCCGUCCACAUACCAGCAAGUGGUCGGGAUCAAUGGGACGCUUUUGGAGAACUAAUAGCCAAUGAAU
........((((.---------...(((((((((((((.((((..........)))).)))))))...)))).))....)))).................. ( -32.60)
>DroYak_CAF1 102 92 - 1
UGUCGAAGCGCCC---------GCUGCUCCAGCUCCCAUCCACAUACCAUCAAGUGGUCGGGAUCAAUGGGACGCUUUUGGAGAACUAAUCGCCAGCGAAU
..(((((((((((---------((((...))))((((..((((..........))))..)))).....))).)))))((((.((.....)).))))))).. ( -32.70)
>DroPer_CAF1 114 92 - 1
AGUAGAUGCGUCAGGAACGGUGUCUGUCCCAGCACACGUCAGCAU---------UGCACGGGAUCAGUGGGACUCGUUUGGUGAACUAAUAGCUAAUGAAU
....((((.(((.((.((((...)))).)).).)).))))..(((---------((((((((.((.....)))))))((((....))))..)).))))... ( -20.60)
>consensus
UGUCGAAGCUCCA_________GCUGCUCCCGCUCCCGUCCACAUACCAUUAAGUGGUCGGGAUCAAUGGGACGCAUUUGGCGAACUAAUCGCCAGUGAAU
.........................(((((((.(((((.((((..........)))).)))))....))))).))..(((((((.....)))))))..... (-18.22 = -20.47 +   2.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:00 2006