Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 19,472,804 – 19,472,924 |
Length | 120 |
Max. P | 0.616839 |
Location | 19,472,804 – 19,472,924 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.11 |
Mean single sequence MFE | -53.73 |
Consensus MFE | -49.25 |
Energy contribution | -50.03 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.02 |
Mean z-score | -1.77 |
Structure conservation index | 0.92 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.616839 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19472804 120 - 20766785 UUGGAGCACCACACCGUAAUGGGCUUUUCCGUCCGCUCCGAGUACUCCAGGGCGUGGGGGAAAAGCCCGUCGCCUGCCAGGCGGUUCACCUUCUUGAAGACCCUGUAGGAAUGGUCCCGC ..((.(.((((..(((..((((((((((((.(((((((.((....))..))))).)).))))))))))))..)....((((.(.((((......))))..)))))..))..))))))).. ( -49.00) >DroSim_CAF1 2615 120 - 1 UUGGAGCACCACACCGUGAUGGGCUUCUCCGUCCGCUCCGAGUACUCCAGGGCGUGGGGGAAGAGCCCGUCGCCCGCCAGGCGGUUCACCUUCUUGAAGACCCUGUAGGAGUGGUCCCGC ..((.(.(((((...((((((((((..(((.(((((((.((....))..))))).)).)))..))))))))))((..((((.(.((((......))))..)))))..)).)))))))).. ( -55.70) >DroYak_CAF1 1931 120 - 1 UUGGAGCACCACACCGUGAUGGGCUUCUCCCUCCGCUCCGAGUACUCCAGGGCGUGGGGGAAGAGCCCGUCUCCCGCCAGGCGGUUCACCUUCUUGAAGACCCUGUAGGAGUGGUCCCGC ..((.(.(((((...(.((((((((..(((((((((((.((....))..))))).))))))..)))))))).)((..((((.(.((((......))))..)))))..)).)))))))).. ( -56.50) >consensus UUGGAGCACCACACCGUGAUGGGCUUCUCCGUCCGCUCCGAGUACUCCAGGGCGUGGGGGAAGAGCCCGUCGCCCGCCAGGCGGUUCACCUUCUUGAAGACCCUGUAGGAGUGGUCCCGC ..((.(.(((((.(((((((((((((.(((.(((((((.((....))..))))).)).))).)))))))))))....((((.(.((((......))))..)))))..)).)))))))).. (-49.25 = -50.03 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:59 2006