Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 19,465,429 – 19,465,534 |
Length | 105 |
Max. P | 0.725631 |
Location | 19,465,429 – 19,465,534 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.45 |
Mean single sequence MFE | -27.15 |
Consensus MFE | -16.12 |
Energy contribution | -17.15 |
Covariance contribution | 1.03 |
Combinations/Pair | 1.17 |
Mean z-score | -2.23 |
Structure conservation index | 0.59 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.725631 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19465429 105 + 20766785 GCUCGAAUCACACACAAAU---------CUGGGGGCA------UACACAUAUAUCUGUCUGCAGGUAAACACGUUGUUUACAGCCACCCAGCUAUAUAACACUAAUUUGAGCUGAGGAGC ((((((((...........---------((((((((.------...........(((....)))((((((.....)))))).))).))))).............))))))))........ ( -30.55) >DroSec_CAF1 74 105 + 1 GCUCGAAUCACACACAAAU---------CUGGGGGCA------UAUACAUAUAUCUGUCUGCAUGUAAACACGUUGUUUACAGCCACCCAGCUAUAUAACACUAAUUUGAGUUGGGGAGC ((((...............---------((((((((.------...(((......))).....(((((((.....)))))))))).)))))..........(((((....))))).)))) ( -27.40) >DroSim_CAF1 70 105 + 1 GCUCGAAUCACACACAAAU---------CUGGGGGCA------UACACAUAUAUCUGUCUGCAGGUAAACACGUUGUUUACAGCCACCCAGCUAUAUAACACUAAUUUGAGCUGGGGAGC ((((((((...........---------((((((((.------...........(((....)))((((((.....)))))).))).))))).............))))))))........ ( -30.55) >DroPer_CAF1 1759 111 + 1 GUUCAAACCGCAUAUACAUAGGAUAGGCCUGAAAGUGUAUAAGUAUAUAUACAUUCGUCUAUA-GUAAACACGUUGUUUACAGAAAGCUAGCUAUAUCACUCUUAAUUAA--------AC .........(.(((((..(((.((((((..(((.(((((((....))))))).))))))))).-((((((.....))))))......)))..))))))............--------.. ( -20.60) >DroEre_CAF1 74 105 + 1 GCUCGAAUCACACACAAAU---------CUGGGGGCA------UACACAUAUAUCUGUCUGCAGGUAAACACGUUGUUUACAGCCACCUAGCUAUAUAACACUAAUUUAAGCUAGGGAGC ((((...............---------(((.(((((------............))))).)))((((((.....)))))).....(((((((................))))))))))) ( -27.99) >DroYak_CAF1 70 105 + 1 GCUCGAAUCACACACAAAU---------CUGGGGGCA------UACACAUAUAUCUGUCUGCAGGUAAACACGUUGUUUACAGCCCCCUAUCUAUAUAACACUAAUUUAAGCUAAGGAGC ((((...............---------..((((((.------...........(((....)))((((((.....)))))).)))))).............((......)).....)))) ( -25.80) >consensus GCUCGAAUCACACACAAAU_________CUGGGGGCA______UACACAUAUAUCUGUCUGCAGGUAAACACGUUGUUUACAGCCACCCAGCUAUAUAACACUAAUUUAAGCUGGGGAGC ((((........................((((((((..................(((....)))((((((.....)))))).))).)))))..........((......)).....)))) (-16.12 = -17.15 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:50 2006