| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,461,199 – 19,461,301 |
| Length | 102 |
| Max. P | 0.563163 |
| Location | 19,461,199 – 19,461,301 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 79.78 |
| Mean single sequence MFE | -30.08 |
| Consensus MFE | -21.21 |
| Energy contribution | -20.72 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.563163 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19461199 102 - 20766785 ACAAGACCGUCGGAAGAUGGUUCCUGGGAGUCAGCGGCAUGGUCUUCGUGGCCGUUGGUCUAGGUAACCAAUAACAAAAUGUAAAGUUUGUAGUUCCUUGC-G ....(((((((....))))))).(((((..(((((((((((.....))).)))))))))))))((((..(((.(((((........))))).)))..))))-. ( -33.50) >DroPse_CAF1 4154 102 - 1 AGAAAACUGUGGGAAGAUGGUUUCUAGGAGUCAGCGGAAUGGUUUUUGUUGCGGUUGGCCUUGGUAAU-GAUAUUCUCUUAACUAAUUUGCCGGCAAAUGCUG ..........(((((.((.(((.(((((.((((((.(((..(...)..)).).))))))))))).)))-.)).))))).............((((....)))) ( -24.20) >DroSec_CAF1 4050 102 - 1 ACAAGACCGUCGGAAGAUGGUUCCUGGGAGUCAGCGGCAUGGUCUUCGUGGCCGUUGGUCUAGGUAACCGAUAACUUAAUGUAAAGUUUGUAGUUCCUUGC-G .((((((((((....)))))).((((((..(((((((((((.....))).)))))))))))))).(((....(((((......)))))....))).)))).-. ( -33.90) >DroEre_CAF1 3900 102 - 1 AUAAAACCGUCGGAAGAUGGUUCCUGGGAGUCAGCGGCAUGGUGUUUGUCGCCGUUGGUCUAGGUAACCAAUAACUCCAUAUAUAGUUUAUAGUUCCUUGC-G ....(((((((....)))))))....(((((..((((((.......)))))).((((((.......)))))).))))).......................-. ( -30.90) >DroYak_CAF1 4066 102 - 1 ACAAAACCGUCGGAAGAUGGUUCCUGGGAGUCAGCGGCAUGGUGUUUGUGGCCGUUGGUCUAGGUAACCAAUAACUACAUAUUAAGUUUGUAGUUCCUUAC-G ....(((((((....)))))))((((((..((((((((............))))))))))))))........(((((((.........)))))))......-. ( -33.80) >DroPer_CAF1 4318 102 - 1 AGAAAACUGUGGGAAGAUGGUUUCUAGGAGUCAGCGGAAUGGUUUUUGUUGCGGUUGGCCUUGGUAAU-GAUAUUCUCUUAACUAAUUUGCCGGCAAAUGCUG ..........(((((.((.(((.(((((.((((((.(((..(...)..)).).))))))))))).)))-.)).))))).............((((....)))) ( -24.20) >consensus ACAAAACCGUCGGAAGAUGGUUCCUGGGAGUCAGCGGCAUGGUCUUUGUGGCCGUUGGUCUAGGUAACCAAUAACUUCAUAUAAAGUUUGUAGUUCCUUGC_G ....(((((((....)))))))((((((...((((((((((.....)))).)))))).))))))....................................... (-21.21 = -20.72 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:47 2006