| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,135,628 – 3,135,722 |
| Length | 94 |
| Max. P | 0.557602 |
| Location | 3,135,628 – 3,135,722 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 85.87 |
| Mean single sequence MFE | -22.63 |
| Consensus MFE | -16.49 |
| Energy contribution | -16.27 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.557602 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3135628 94 + 20766785 AGUGCGAGUUCCAAAAGGGGAACCAAUUAGGUGCACACUA-CAUUAAACAACUAGCUGUUUUAAAAUAGCGAGCUGAAUCAUUUCAGCUUAGACC .((((...((((.....))))(((.....)))))))....-.............((((((....))))))((((((((....))))))))..... ( -26.70) >DroSec_CAF1 25721 94 + 1 AGUGCGAGUUCCCAAAGGGGAACCAAUUAGAUGCACACUCUUACUAAACAGCUAGCUGUUUUACAAUAACGAGCUGAAUCAUUUUUGUUGAUAA- .(((((.((((((....))))))(.....).)))))............(((((.(.((((....)))).).))))).((((.......))))..- ( -21.40) >DroSim_CAF1 26157 93 + 1 AGUGCGAGUUCCAAAAGGGGAACCAAUUAGGUGCACACUA-CAUUAAGCAAGUAGCUGUUUAAAAAUAACGAGCUGAAUCAUUUCUGUUGUUAA- .((((...((((.....))))(((.....)))))))....-..(((((((......)))))))...((((.(((.(((....))).))))))).- ( -19.80) >consensus AGUGCGAGUUCCAAAAGGGGAACCAAUUAGGUGCACACUA_CAUUAAACAACUAGCUGUUUUAAAAUAACGAGCUGAAUCAUUUCUGUUGAUAA_ .(((((.(((((......)))))........)))))................((((((((.......))).)))))................... (-16.49 = -16.27 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:56 2006