Locus 6177

Sequence ID 2R_DroMel_CAF1
Location 19,442,500 – 19,442,619
Length 119
Max. P 0.647553
window9892

overview

Window 2

Location 19,442,500 – 19,442,619
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 78.24
Mean single sequence MFE -25.28
Consensus MFE -19.47
Energy contribution -19.40
Covariance contribution -0.07
Combinations/Pair 1.29
Mean z-score -1.33
Structure conservation index 0.77
SVM decision value 0.24
SVM RNA-class probability 0.647553
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19442500 119 - 20766785
A-UAGAACACACGAUCUCUUGAACUCCUUAACUACCCGCAUUCAUAGCUUAAUGGUGGUUACAUCGGUUAGUGAAUUUGACUGCCUUUCAGUUGCAAAAGAUCCCUGAAACCAACAGACA
.-..........(((((.(((((((...((((((((.((.......)).....))))))))...(((((((.....)))))))......)))).))).))))).(((.......)))... ( -23.10)
>DroSec_CAF1 7001 119 - 1
A-GAGAAAACACGAUCUCUUGAACCCUUCAACUACCCGCAUUCAUAGCUUAAUGGUGGUUACUUCGGUUAGUGAAUUCGACUGCCUUACAGUUGUAAGAGAUCCCAGAAACAAACACACA
.-..........(((((((((((((....(((((((.((.......)).....))))))).....))))........((((((.....)))))))))))))))................. ( -26.80)
>DroSim_CAF1 7991 119 - 1
A-AAGAACACACGAUCUCUUGAACCCUUCAACUACCCGCAUUCAUAGCUUAAUGGUGGUUACUUCGGUUAGUGAAUUCGACUGUCUUACAGUUGUAAGAGAUCCCAGAAACAAACACACA
.-..........(((((((((((((....(((((((.((.......)).....))))))).....))))........((((((.....)))))))))))))))................. ( -27.60)
>DroEre_CAF1 8054 113 - 1
ACUAGA--ACACGAUCUCUAGAACUCCUUCACUACUCACAUUCAUAGUUUAUUGGUGGUUACUUCGGUUAGUGAUUGUAACUGGCUUCCAGUUGUAAGAACUCGCUGCAAACAC-----A
.(((((--........)))))........(((((...((.......))....)))))(((....((((.(((..((((((((((...))))))))))..))).))))..)))..-----. ( -22.60)
>DroYak_CAF1 7729 110 - 1
UCUAGA--ACACGACCUCUAGAACCCCUCAACUGCUCACAAUCGUAGUUUAAUGGUGGUUACUUCGGUUAGUGACUGUAAC--------AGUUGUAGGAAAUCCCUAAAAACACUGAAAA
((((((--........))))))(((....((((((........))))))....)))(((((((......)))))))....(--------(((..((((.....)))).....)))).... ( -26.30)
>consensus
A_UAGAA_ACACGAUCUCUUGAACCCCUCAACUACCCGCAUUCAUAGCUUAAUGGUGGUUACUUCGGUUAGUGAAUUUGACUGCCUUACAGUUGUAAGAGAUCCCUGAAACCAACACACA
............(((((((((((((....(((((((.((.......)).....))))))).....))))........((((((.....)))))))))))))))................. (-19.47 = -19.40 +  -0.07)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:43 2006