Locus 6175

Sequence ID 2R_DroMel_CAF1
Location 19,431,562 – 19,431,652
Length 90
Max. P 0.945121
window9890

overview

Window 0

Location 19,431,562 – 19,431,652
Length 90
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 77.08
Mean single sequence MFE -16.67
Consensus MFE -13.58
Energy contribution -13.75
Covariance contribution 0.17
Combinations/Pair 1.08
Mean z-score -1.65
Structure conservation index 0.81
SVM decision value 1.35
SVM RNA-class probability 0.945121
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19431562 90 + 20766785
CGCAAC---CUUUUCUCAUACUCCU-CAUGGUGACAUUUUCAGGUUCAAACAAUUGUAGACCACCAUUAUGACGCCACCAAAACGGCGUCUAAA
......---................-.(((((((.....)).(((((((....)))..)))))))))...((((((........)))))).... ( -17.10)
>DroVir_CAF1 18712 70 + 1
-------------------AUACCU-UAUG----CAUUUUCAGGUUCAAACAAUUGUAGACCACCAUUAUGACGCCAUAAAAACGGCGUCGAGA
-------------------......-....----...((((.(((((((....)))..))))........((((((........)))))))))) ( -15.80)
>DroPse_CAF1 7035 91 + 1
AUCAACC--GUUUUUUCAUAUGCAU-CAUGGUAACAUUUCCAGGUCCAAACAAUUGUAGACCACCAUUAUGACGCCACCAGAACGGCGUCGAAA
.......--....((((........-..(((........)))((((...((....)).))))........((((((........)))))))))) ( -18.90)
>DroGri_CAF1 10203 74 + 1
-------------------AUACUU-UAUGCUAACAUUUUCAGGUACAAACAAUUGUAGACCACCAUUAUGACGCCGUAAAAACAGCGUCGAGG
-------------------......-............(((.(((((((....))))..)))........(((((.((....)).)))))))). ( -13.20)
>DroAna_CAF1 6685 94 + 1
UGCAACCUACUUUUCUCAUACUCGUCCAUGGUAACAUUUUCAGGUUCAAACAAUUGUAGACCACCAUUAUGACGCCACCAAAACGGCGUCUAAA
......((((.........((..(...(((....)))...)..))..........))))...........((((((........)))))).... ( -16.11)
>DroPer_CAF1 7034 91 + 1
AUCAACC--GUUUUUUCAUAUGCAU-CAUGGUAACAUUUCCAGGUCCAAACAAUUGUAGACCACCAUUAUGACGCCACCAGAACGGCGUCGAAA
.......--....((((........-..(((........)))((((...((....)).))))........((((((........)))))))))) ( -18.90)
>consensus
__CAAC____UUUU_UCAUAUACAU_CAUGGUAACAUUUUCAGGUUCAAACAAUUGUAGACCACCAUUAUGACGCCACCAAAACGGCGUCGAAA
..........................................(((((((....)))..))))........((((((........)))))).... (-13.58 = -13.75 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:41 2006