Locus 6173

Sequence ID 2R_DroMel_CAF1
Location 19,420,179 – 19,420,269
Length 90
Max. P 0.655448
window9888

overview

Window 8

Location 19,420,179 – 19,420,269
Length 90
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 76.27
Mean single sequence MFE -30.98
Consensus MFE -20.50
Energy contribution -20.53
Covariance contribution 0.03
Combinations/Pair 1.32
Mean z-score -1.22
Structure conservation index 0.66
SVM decision value 0.26
SVM RNA-class probability 0.655448
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19420179 90 + 20766785
GGGCACCACGCUAGCAGCGGCGAUGUACAUCGUUGGUGCCGUGGAAAUCGUAUUGGUGAGUUAAGAGCGCC------CACUCCCAG-----------GCACCAAUCC
((((.(((((...(((.(((((((....))))))).))))))))........((((.((((..........------.))))))))-----------)).))..... ( -32.10)
>DroSec_CAF1 2850 90 + 1
GGGCACCACGCUAGCAGCGGCGAUGUACAUCGUUGGUGCCGUGGAAAUCGUAUUGGUGAGUUAAGAGCGCC------CACUCUCGG-----------GCACCAAUUC
.((((((((((.....)))(((((....))))))))))))...........((((((..((.....))(((------(......))-----------)))))))).. ( -34.20)
>DroSim_CAF1 2872 90 + 1
GGGCACCACGCUAGCAGCGGCGAUGUACAUCGUUGGUGCCGUGGAAAUCGUAUUGGUGAGUUAAGAGCGCC------CACUCCCGG-----------GCACCAAUUC
.((((((((((.....)))(((((....))))))))))))...........((((((..((.....))(((------(......))-----------)))))))).. ( -34.20)
>DroEre_CAF1 2976 107 + 1
GGGCACCACACUAGCAGCGGCGAUGUACAUCGUUGGUGCCGUGGAAAUCGUGUUGGUGAGUUAAGAGACCCUGCUUCCACUUCCACUUCCACUACCAGCCCCAAUCC
((((.........(((.(((((((....))))))).))).((((((...(((..((((.(...((.....))....)))))..))))))))).....))))...... ( -36.80)
>DroYak_CAF1 3016 90 + 1
GGGCACCACACUAGCAGCGGCGAUGUACAUCGUUGGUGCCGUGGAAAUCGUAUUGGUAAGUUAAGAGCCCC------CACUUCCACUCCCACUACC-----------
((((.((((....(((.(((((((....))))))).))).))))...((..(((....)))...)))))).------...................----------- ( -26.00)
>DroAna_CAF1 2844 86 + 1
GGGAACCACAUUAGCAGCGGCAAUGUAUAUAGUCGGUGCUGUGGAAAUCGUAUUGGUAAGAUGACUAGGCU------CUCU----A-----------ACCCAUAACC
(((..(((((...(((.((((..........)))).)))))))).....((.(((((......))))))).------....----.-----------.)))...... ( -22.60)
>consensus
GGGCACCACACUAGCAGCGGCGAUGUACAUCGUUGGUGCCGUGGAAAUCGUAUUGGUGAGUUAAGAGCGCC______CACUCCCAG___________GCACCAAUCC
.....(((((...(((.(((((((....))))))).)))))))).........(((.((((.................)))))))...................... (-20.50 = -20.53 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:39 2006