Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,132,023 – 3,132,113 |
Length | 90 |
Max. P | 0.955618 |
Location | 3,132,023 – 3,132,113 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 72.22 |
Mean single sequence MFE | -13.84 |
Consensus MFE | -5.70 |
Energy contribution | -5.70 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.11 |
Structure conservation index | 0.41 |
SVM decision value | 1.46 |
SVM RNA-class probability | 0.955618 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3132023 90 + 20766785 CGUAAGGCGCUCGGGCGCCAAUGCACCACCACACACCACUCAUCAUCACUCACAACUCGCAAUUACAGCAAUUUCUUUUAAUUGCAAUCA .(((((((((....)))))..(((..................................))).)))).((((((......))))))..... ( -18.48) >DroPse_CAF1 19194 71 + 1 C---------UCGGAUGUCCAUG----------CAAUCGUCUCAGCACUUGGCAAGUCGCAAUUACAGCAAUUUCUUUUAAUUGCAAUCA .---------...(((..(((((----------(..........)))..)))...))).........((((((......))))))..... ( -11.40) >DroSec_CAF1 22039 69 + 1 CGU----------GGCGCCU-UG----------CACCACUCACCACCCAUCACAACUCGCAAUUACAGCAAUUUCUUUUAAUUGCAAUCA .((----------((.((..-.)----------).))))............................((((((......))))))..... ( -12.90) >DroSim_CAF1 22498 69 + 1 CGU----------GGCGCCU-UG----------CAGCACUCACCGCCCAUCACAACUCGCAAUUACAGCAAUUUCUUUUAAUUGCAAUCA .(.----------((((...-.(----------.....)....)))))...................((((((......))))))..... ( -10.20) >DroPer_CAF1 19039 71 + 1 C---------UCGGAUGCCCAUG----------CAAUCGUCUCAGCACUUGGCAAGUCGCAAUUACAGCAAUUUCUUUUAAUUGCGAUCA .---------.....((((..((----------(..........)))...)))).((((((((((.((......))..)))))))))).. ( -16.20) >consensus CGU_______UCGGGCGCCCAUG__________CAACACUCACCGCCCAUCACAACUCGCAAUUACAGCAAUUUCUUUUAAUUGCAAUCA ...................................................................((((((......))))))..... ( -5.70 = -5.70 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:55 2006