Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 19,402,969 – 19,403,089 |
Length | 120 |
Max. P | 0.704048 |
Location | 19,402,969 – 19,403,089 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.36 |
Mean single sequence MFE | -38.80 |
Consensus MFE | -27.79 |
Energy contribution | -28.73 |
Covariance contribution | 0.94 |
Combinations/Pair | 1.24 |
Mean z-score | -1.79 |
Structure conservation index | 0.72 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.704048 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19402969 120 + 20766785 AUCGGACAAGGUGGAAAAGAACCUUGCUCACCUGCAAACGCUUCUGGAGAAAGCACAUGUGAAGCCCAGCGUGAUAUGCAGAGGCUGCAAUAUGCAGCGAUACUGCAGCCUGUCCCAUCU ...(((((((((........)))))......(((((.(((((...((.....((....))....)).)))))....)))))((((((((.(((......))).))))))))))))..... ( -40.40) >DroSec_CAF1 6279 120 + 1 AUCGGACGAGGUGGAAAAGAACCUUGCCCACCUGCAAAAGCUUCUGGAGAGAUCACAUGUGAAGCCCAACGUGAUUUGCAGAGGCUGCAAUAUGCAGCGAUACUGCAGCCUGUCCCAUCU ...(((((((((((..(((...)))..))))))((...((((((((.(..((((((...((.....))..))))))).))))))))......(((((.....))))))).)))))..... ( -41.30) >DroSim_CAF1 6296 120 + 1 AUCGGACGAGGUGGAAAAGAACCUUGCCCACCUGCAACAUCUUCUGGAGAAAGCACAUGUGAAGCCCAACGUGAUUUGCAGAGGCUGCAAUAUGCAGCGAUACUGCAGCCUGUCCCAUCU ...((((.((((((..(((...)))..))))))((((.(((...(((.(...((....))....))))....)))))))..((((((((.(((......))).))))))))))))..... ( -39.30) >DroYak_CAF1 6288 120 + 1 CUCGGAUGACUUGGAAAGGAACCUAAUCUUCCUUCAGACGCUUCUGGAGAAAGCACACGUAAGGCCCAAAGUGAUUUGCAGAGGAUGCAAAAUCCAGCGAUACUGCAGCGUGUCGCAUCU (((((((.((((((.............(((.(((((((....))))))).)))....(....)..)).)))).))))).)).((((.....)))).(((((((......))))))).... ( -34.20) >consensus AUCGGACGAGGUGGAAAAGAACCUUGCCCACCUGCAAAAGCUUCUGGAGAAAGCACAUGUGAAGCCCAACGUGAUUUGCAGAGGCUGCAAUAUGCAGCGAUACUGCAGCCUGUCCCAUCU ...((.((((((........)))))).))..(((((((...(((....)))....(((((........))))).)))))))((((((((.(((......))).))))))))......... (-27.79 = -28.73 + 0.94)
Location | 19,402,969 – 19,403,089 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.36 |
Mean single sequence MFE | -40.48 |
Consensus MFE | -27.46 |
Energy contribution | -28.40 |
Covariance contribution | 0.94 |
Combinations/Pair | 1.16 |
Mean z-score | -1.62 |
Structure conservation index | 0.68 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.559214 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19402969 120 - 20766785 AGAUGGGACAGGCUGCAGUAUCGCUGCAUAUUGCAGCCUCUGCAUAUCACGCUGGGCUUCACAUGUGCUUUCUCCAGAAGCGUUUGCAGGUGAGCAAGGUUCUUUUCCACCUUGUCCGAU ..((.((((((((((((((((......))))))))))))(((((....(((((((((.........))))((....))))))).)))))......(((((........))))))))).)) ( -41.10) >DroSec_CAF1 6279 120 - 1 AGAUGGGACAGGCUGCAGUAUCGCUGCAUAUUGCAGCCUCUGCAAAUCACGUUGGGCUUCACAUGUGAUCUCUCCAGAAGCUUUUGCAGGUGGGCAAGGUUCUUUUCCACCUCGUCCGAU ..((.((((((((((((((((......)))))))))))).((((((.....(((((..(((....)))....))))).....))))))((((((.(((...))).))))))..)))).)) ( -45.70) >DroSim_CAF1 6296 120 - 1 AGAUGGGACAGGCUGCAGUAUCGCUGCAUAUUGCAGCCUCUGCAAAUCACGUUGGGCUUCACAUGUGCUUUCUCCAGAAGAUGUUGCAGGUGGGCAAGGUUCUUUUCCACCUCGUCCGAU ..((.((((((((((((((((......)))))))))))).((((((((...(((((...((....)).....)))))..))).)))))((((((.(((...))).))))))..)))).)) ( -42.90) >DroYak_CAF1 6288 120 - 1 AGAUGCGACACGCUGCAGUAUCGCUGGAUUUUGCAUCCUCUGCAAAUCACUUUGGGCCUUACGUGUGCUUUCUCCAGAAGCGUCUGAAGGAAGAUUAGGUUCCUUUCCAAGUCAUCCGAG (((((((.(((((....(((..(((.((.((((((.....)))))).....)).)))..))))))))).(((....)))))))))...(((.((((.((.......)).)))).)))... ( -32.20) >consensus AGAUGGGACAGGCUGCAGUAUCGCUGCAUAUUGCAGCCUCUGCAAAUCACGUUGGGCUUCACAUGUGCUUUCUCCAGAAGCGUUUGCAGGUGGGCAAGGUUCUUUUCCACCUCGUCCGAU .(((..(..((((((((((((......))))))))))))...)..)))..(((((((........((((((((.((((....)))).))).))))).((.......)).....))))))) (-27.46 = -28.40 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:34 2006