| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,398,774 – 19,398,894 |
| Length | 120 |
| Max. P | 0.622957 |
| Location | 19,398,774 – 19,398,894 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.89 |
| Mean single sequence MFE | -37.13 |
| Consensus MFE | -15.98 |
| Energy contribution | -15.90 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.32 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.43 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.622957 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19398774 120 + 20766785 AAUCGAGGAGACCAAAGGCCGGCUCAAGAUGAUCGACACGCUGAGCAACUUCUUCUGCUCUGUGAUGCUGGUCAGUCCGGAGGAUCUUGUGCCCAGCGUCUACCUCAGCAUCAACCAACU ....((((((((.....((.(((.(((((((((((.(((((.(((((........))))).))).)).)))))).(((...)))))))).)))..)))))).)))).............. ( -40.10) >DroVir_CAF1 3564 120 + 1 UAUUGAGGAGACUUCGGGACGAUUAAAAAUGAUUGACAUAUUGAGCAACUUUUUUUGCUCGGUUAUGUUGGUUAGUCCGGAAGACCUGGUGCCGUGCGUCUACCUCAGCAUCAAUCAGCU ...(((((((((..(((.((.........((((..(((((((((((((......)))))))).)))))..))))((.(....)))...)).)))...)))).)))))((........)). ( -41.30) >DroGri_CAF1 2413 120 + 1 GAUUGAGGAGACGAAAGGCCGAUUGAAAAUGAUUGAUAUAUUGAGCAAUUUUUUUUGCUCGGUAAUGAUGGUCAGUCCAGAAGAUCUGGUGCCGUGUGUCUAUCUCAGCAUUAAUCAGUU (.(((((((((((...((((((((((..((.((.....((((((((((......)))))))))))).))..))))))(((.....)))).)))...))))).)))))))........... ( -38.10) >DroWil_CAF1 6342 120 + 1 UAUAGAAGAAACUAAGGGGCGCCUAAAGAUGAUCGAUACCCUUAGCAACUUUUUCUGUUCCGUAAUGUUGGUCAGCCCGGAGGAUCUCUUGCCCAGCGUUUACCUUAGUAUUAACCAAUU ..........(((((((.((((...((((.((((..........(((........)))((((...((.....))...)))).)))))))).....))))...)))))))........... ( -26.60) >DroMoj_CAF1 2351 120 + 1 UAUUGAGGAGACAAAAGGCCGACUGAAAAUGAUUGAUACAUUGAGUAAUUUCUUUUGCUCCGUAAUGCUGGUUAGUCCGGAGGACUUACUGCCGUGCGUUUACCUGAGUAUCAACCAGCU .((((.((((.(((((((...(((...((((.......)))).)))....))))))))))).))))((((((((.((.((..(((.(((....))).)))..)).)).))...)))))). ( -33.90) >DroAna_CAF1 2095 120 + 1 CAUUGAAGAGACAAAAGGGCGCCUGAAAAUGAUCGACACACUGAGCAAUUACUUUUGUUCGGUCAUGUUGGUCAGCCCCAGUGAUCUGGUGCCCAGCGUGUAUCUCAGUAUUAACCAAUU .(((((.((.(((...(((((((.((...(((((((((.(((((((((......)))))))))..)))))))))((....))..)).)))))))....))).)))))))........... ( -42.80) >consensus UAUUGAGGAGACAAAAGGCCGACUGAAAAUGAUCGACACACUGAGCAACUUCUUUUGCUCGGUAAUGUUGGUCAGUCCGGAGGAUCUGGUGCCCAGCGUCUACCUCAGCAUCAACCAACU ..((((((((((....((.((........((((((.((....((((((......)))))).....)).))))))(((.....)))....))))....)))).))))))............ (-15.98 = -15.90 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:32 2006