| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,396,712 – 19,396,826 |
| Length | 114 |
| Max. P | 0.850360 |
| Location | 19,396,712 – 19,396,826 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 73.39 |
| Mean single sequence MFE | -26.65 |
| Consensus MFE | -13.72 |
| Energy contribution | -13.19 |
| Covariance contribution | -0.53 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.850360 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19396712 114 - 20766785 CAGCCACAGCAGCC------ACUGCUGAACUCGACGCAGUUCGUCCAGGCCUUCACGUACCUUAUCCAGAACGAUAAGGAGUUUGCCAACAAGCUGCACAAGGCCUACCUGAACGGCUGU (((((.((((((..------.))))))...........(((((...(((((((...((.(((((((......)))))))((((((....))))))))..)))))))...)))))))))). ( -44.90) >DroVir_CAF1 836 111 - 1 ---------CAACCAUAUUUGCCACUUAACUCUACGCAAUUCGUACAGGCCUUUACUUACCUUAUUCAGAACGACAAGGAGUUUGUCAAUAAGUUGCAUAAAGCCUAUAUCGACGGCUGU ---------...........(((.........((((.....)))).((((.((((..((.((((((..((((........))))...)))))).))..))))))))........)))... ( -19.30) >DroGri_CAF1 79 102 - 1 ---------AAAC---------CACUUAAUUGUGCCCAAUUUGUGCAGGCCUUCACUUACCUGAUUAAAAACGAUAAGGAAUUUGUUAACAAGUUGCAUAAAGCCUAUAUCAAUGGCUGC ---------....---------.......((((((..(((((((.((((..........))))......(((((........))))).)))))))))))))((((.........)))).. ( -20.20) >DroEre_CAF1 40 96 - 1 ------------------------CUUAAUUCGACGCAGUUCGUUCAGGCCUUCACUUACCUUAUCCAGAACGAUAAGGAGUUCGCCAACAAGCUGCACAAGGCCUAUCUGAACGGCUGU ------------------------...........(((((.((((((((((((......(((((((......))))))).((..((......)).))..))))))....))))))))))) ( -30.00) >DroWil_CAF1 40 111 - 1 CAGC---AGCAGCC------GCCUUUAAAUUCAACACAGUUUGUCCAGGCGUUCACUUAUCUCAUACAAAACGAUAAGGAUUUUGCUAACAAGUUGCAUAAAGCCUAUCUCAAUGGCUGU ..((---(((...(------((((.((((((......))))))...))))).((.((((((...........))))))))............)))))....((((.........)))).. ( -25.70) >DroMoj_CAF1 40 111 - 1 ---------CAACCAUAUUUUCCACUUAACUCUGCGCAGUUCGUGCAGGCCUUUACUUACCUUAUUCAAAACGACAAGGAAUUUGUUAAUAAGUUGCAUAAAGCCUACAUCAAUGGCUGU ---------((.((((.................((((.....))))((((.((((..((.((((((...(((((........))))))))))).))..))))))))......)))).)). ( -19.80) >consensus _________CAACC_______CCACUUAACUCUACGCAGUUCGUCCAGGCCUUCACUUACCUUAUUCAAAACGAUAAGGAGUUUGCCAACAAGUUGCAUAAAGCCUAUAUCAACGGCUGU ...................................((((((.((...(((.........(((((((......))))))).....))).)).))))))....((((.........)))).. (-13.72 = -13.19 + -0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:31 2006