Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 19,392,101 – 19,392,211 |
Length | 110 |
Max. P | 0.728551 |
Location | 19,392,101 – 19,392,211 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 82.12 |
Mean single sequence MFE | -40.08 |
Consensus MFE | -26.42 |
Energy contribution | -26.65 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.23 |
Mean z-score | -2.10 |
Structure conservation index | 0.66 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.728551 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19392101 110 + 20766785 CUGCACUUGUCUCGGGAGAGCGGGACGGAAAAU--UUCAUUCGUUUCCGCGUUUGGAGGCG-GUCCUAACGAGCUCCACUCGACAUAGGGGUGGAAAUCUGACUUUCCGGCGC ..((.((((.(((....))))))).((((((..--.(((.(((((((((....))))))))-).......((..(((((((.......)))))))..))))).)))))))).. ( -39.00) >DroPse_CAF1 10129 108 + 1 CUGCACUUGUCUCUGGUGAAAGAGAUAGAAAAUAUUUCA-----CUCCGCGUUUGGGGGCGUGUGCUAACGAGCUCCAAACGAACUAGGGGUGGAAAUUUUACGCUACAAUUU ..((..((((((((......))))))))(((((.(((((-----((((.(((((((((.(((......)))..))))))))).....))))))))))))))..))........ ( -40.20) >DroEre_CAF1 5941 110 + 1 CUGCACUUGUCUCGGGAGAACGGGACGGAAAAU--UUCAUUCGUUUCCGCGUUUGGAGGCG-GUGCUAACGAGCUCCACUCGACAUAGGGGUGGAAAUGCCACUUUCCGGCGC ........((((((......))))))(((((..--........)))))((((..(((((.(-(((((....)))(((((((.......)))))))...))).)))))..)))) ( -39.80) >DroYak_CAF1 5944 110 + 1 CUGCACUUGUCUCGGGAGAACGGGACGGAAAAU--UUCAUUCGUUUCCGCGUUUGGAGGCG-GUGCUAACGAGCUCCACUCGACAUAAGGGUGGAAAUGCUAUUUUCCGGCGC ..((....((((((......))))))(((((((--..((((((((((((....))))))))-..(((....)))(((((((.......)))))))))))..))))))).)).. ( -42.00) >DroAna_CAF1 4876 110 + 1 CUGCACUUGUCUCCGGAGAAAGGGACGGAAAAU--UUCAUUCGUUUCCGCGUUUGGAGGCG-GUGCUAACGAGCUCCACUCGACAUAAGGGUGGAAAUUGGAUGAAGCGGCGC ..(((((.((((((((((...(..(((((....--....)))))..)..).))))))))))-))))...(((..(((((((.......)))))))..)))............. ( -39.30) >DroPer_CAF1 8869 108 + 1 CUGCACUUGUCUCUGGUGAAAGAGAUAGAAAAUAUUUCA-----CUCCGCGUUUGGGGGCGUGUGCUAACGAGCUCCAAACGAACUAGGGGUGGAAAUUUUACGCUACAAUUU ..((..((((((((......))))))))(((((.(((((-----((((.(((((((((.(((......)))..))))))))).....))))))))))))))..))........ ( -40.20) >consensus CUGCACUUGUCUCGGGAGAAAGGGACGGAAAAU__UUCAUUCGUUUCCGCGUUUGGAGGCG_GUGCUAACGAGCUCCACUCGACAUAGGGGUGGAAAUUUUACGUUCCGGCGC ..((((((((((((......))))))))..............(((((((....)))))))..))))........(((((((.......))))))).................. (-26.42 = -26.65 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:30 2006