Locus 6164

Sequence ID 2R_DroMel_CAF1
Location 19,389,206 – 19,389,309
Length 103
Max. P 0.874133
window9877

overview

Window 7

Location 19,389,206 – 19,389,309
Length 103
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 76.44
Mean single sequence MFE -21.92
Consensus MFE -11.66
Energy contribution -12.70
Covariance contribution 1.04
Combinations/Pair 1.21
Mean z-score -2.02
Structure conservation index 0.53
SVM decision value 0.88
SVM RNA-class probability 0.874133
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19389206 103 - 20766785
-UUCGAUA----GUGGCUGAAUUAUCAGCUAAGCGGCUGGAAACUUUAUUCACUCAUAAAUAGCUAUUUAAGAUUUUGUUCAUUUUGGCAUUUUACCAAGUUUACUAA
-.((...(----(((((((......(((((....)))))(((......))).........))))))))...))....((....(((((.......)))))...))... ( -17.90)
>DroSec_CAF1 2724 103 - 1
-UUUAAUA----GUGGCUGAGUUAUCAGCCAAGCGGCUGGAAACUUUAAUCACUCAUAAAUUGCUAUUUAAGAUUUUGUUCAUUUUGGCACUUUACCAAGUUCACUAA
-.....((----(((((((((((.((((((....)))))).)))))..........((((.(((((.....((......))....))))).))))...)).)))))). ( -24.90)
>DroSim_CAF1 2999 103 - 1
-UUUAAUA----GUGGCUGAGUUAUCAGCCAAGCGGCUGGAAACUUUAAUCACUCACAAAUUGCUAUUUAAGAUUUUGUUCAUUUUGGCACUUUACCAAGUUCACUAA
-.....((----(((((((((((.((((((....)))))).)))))...........(((.(((((.....((......))....))))).)))....)).)))))). ( -23.80)
>DroEre_CAF1 3048 94 - 1
GUUAAAUAUGGAGUGGCUUAGUUAUCAGCUAAGCGGCUGGAAUCUAUAAUCAUUUUGAGAUUC-------------UGUUCCUUUUGGCAUUUUACCAAG-CCACUAA
...........((((((((.((.....((((((.((..(((((((.(((.....)))))))))-------------)...)).)))))).....)).)))-))))).. ( -28.40)
>DroYak_CAF1 3011 96 - 1
GUUUAAUAUAGA--------GUUAUCAGCUAACCAGCUGGAAUCUAUAUUCACUUGUAAACUCCUAUUC----CUUUGUUCUUUUUGGCAUUUUACCAAUUUCACUAA
((((((((((((--------....((((((....))))))..))))))).......)))))........----...........((((.......))))......... ( -14.61)
>consensus
_UUUAAUA____GUGGCUGAGUUAUCAGCUAAGCGGCUGGAAACUUUAAUCACUCAUAAAUUGCUAUUUAAGAUUUUGUUCAUUUUGGCAUUUUACCAAGUUCACUAA
............((((..(((((.((((((....)))))).)))))...))))...............................((((.......))))......... (-11.66 = -12.70 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:27 2006