Locus 6162

Sequence ID 2R_DroMel_CAF1
Location 19,386,806 – 19,386,914
Length 108
Max. P 0.551483
window9875

overview

Window 5

Location 19,386,806 – 19,386,914
Length 108
Sequences 3
Columns 119
Reading direction reverse
Mean pairwise identity 92.13
Mean single sequence MFE -32.43
Consensus MFE -28.33
Energy contribution -29.17
Covariance contribution 0.83
Combinations/Pair 1.00
Mean z-score -1.77
Structure conservation index 0.87
SVM decision value 0.04
SVM RNA-class probability 0.551483
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19386806 108 - 20766785
CAAGGCAUUAUCCUGCCAGCGAUGUAUGAUUUGUGUACGAU-----------GUAUGUUACUGAUGUAGAAAUGCACUGGCGGGUGUGUAUCAAUAGUGUUAUCUACAUGGGUAGAAUU
...((((......)))).(((.(((((.......))))).)-----------))...(((((.(((((((...((((((...(((....)))..))))))..))))))).))))).... ( -31.30)
>DroSec_CAF1 322 118 - 1
CAAGGCAUUAUCCUGCCAGCGAUGUAUGAUUUGUGUACGAUGUAUGUACGAUGUAUGUAACUGAUGUAGAAAUGCACUGGCGGGUGUGUAUCAAUAGUGUUGUCUACAUGGGUAG-AUU
...((((((((((((((((...........(((..((((.(((....))).))))..)))....((((....)))))))))))).........))))))))((((((....))))-)). ( -33.00)
>DroSim_CAF1 615 118 - 1
CAAGGCAUUAUCCUGCCAGCGAUGUAUGAUUUGUGUACGAUGUAUGUACGAUGUAUGUAACUGAUGUAGAAAUGCACUGGCGGGUGUGUAUCAAUAGUGUUGUCUACAUGGGUAG-AUU
...((((((((((((((((...........(((..((((.(((....))).))))..)))....((((....)))))))))))).........))))))))((((((....))))-)). ( -33.00)
>consensus
CAAGGCAUUAUCCUGCCAGCGAUGUAUGAUUUGUGUACGAUGUAUGUACGAUGUAUGUAACUGAUGUAGAAAUGCACUGGCGGGUGUGUAUCAAUAGUGUUGUCUACAUGGGUAG_AUU
...((((......)))).((((........))))(((((.(((....))).)))))...(((.(((((((...((((((...(((....)))..))))))..))))))).)))...... (-28.33 = -29.17 +   0.83)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:25 2006