| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,376,221 – 19,376,317 |
| Length | 96 |
| Max. P | 0.585489 |
| Location | 19,376,221 – 19,376,317 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 85.86 |
| Mean single sequence MFE | -22.85 |
| Consensus MFE | -18.60 |
| Energy contribution | -18.10 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.585489 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19376221 96 - 20766785 -ACAAGCUGUCAUGCUUUAUGAUCUACGAGUAAGAUCCUCAGAAAGGGUAUUUACAGUUCGAAAGCUUUUCAUGCAUCAGCUUUCGAUAACCGAUAG----- -.....(((((..................((((((((((.....))))).)))))...(((((((((...........))))))))).....)))))----- ( -22.20) >DroSec_CAF1 3102 97 - 1 UCCGAACUGUCAUGCUUUAUGAUCCACGAGUAAGAUCUUCAGAAAGGGUAUUUACAAUUCGAAAGCUUUUCAUGCAGCAGCUUUCGAUAACCGAUAG----- ......(((((((.((((..((((.........)))).....)))).)).........(((((((((...........))))))))).....)))))----- ( -19.90) >DroSim_CAF1 3153 96 - 1 -ACAAGCUGUCAUGCUUUCUGAUCUACGAGUAAGAUCUUCAGAAAGGGUAUUAACAAUUCGAAAGCUUUUCAUGCAGCAGCUUUCGAUAACCGAUAG----- -.....(((((((.(((((((((((.......)))...)))))))).)).........(((((((((...........))))))))).....)))))----- ( -25.60) >DroYak_CAF1 3167 100 - 1 --GAAACUGUCGUUUUCUAUGAUCUACGAAUAAGCUCUUCAGAAAGAGUAUUUACAGUUCGAAAGCUCUUUAUGCACUAGCUUUCGAUAACCGAUAGUAUGC --...(((((((.....................((((((....)))))).........(((((((((...........)))))))))....))))))).... ( -23.70) >consensus _ACAAACUGUCAUGCUUUAUGAUCUACGAGUAAGAUCUUCAGAAAGGGUAUUUACAAUUCGAAAGCUUUUCAUGCAGCAGCUUUCGAUAACCGAUAG_____ ......((((((((((((.(((....(......)....)))...))))))).......(((((((((...........))))))))).....)))))..... (-18.60 = -18.10 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:23 2006