Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,116,965 – 3,117,063 |
Length | 98 |
Max. P | 0.685206 |
Location | 3,116,965 – 3,117,063 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 89.64 |
Mean single sequence MFE | -30.08 |
Consensus MFE | -25.62 |
Energy contribution | -25.34 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.08 |
Mean z-score | -1.41 |
Structure conservation index | 0.85 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.685206 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3116965 98 + 20766785 ACAUGCAAAGUGCAGGUGCACAUUCAGCUGCAGCGGCAAGGCAACUGCGCGACUGUUCGGCUUGAAAUGCCAACUAGGCGAGUGCUGUGUUGUAGUAA ...(((....(((((.((......)).)))))((((((.((((.((.(((....(((.(((.......))))))...))))))))).)))))).))). ( -32.30) >DroSec_CAF1 12378 93 + 1 ACAUGCAAAGUGCAGGUGCACAUUCAGCUGCAGCGGCAAGUCAACUGCGCCACUGUUCGGCUUGAAAUGCCAACUAGGCGAGU-----GUUAUAGUAA ((.(((.....))).))((((.(((((((((((.(((.((....))..))).))))..))).)))).((((.....)))).))-----))........ ( -28.30) >DroSim_CAF1 12411 93 + 1 ACAUGCAAAGUGCAGGUGCACAUUCAGCUGCAGCGGCAAGUCAACUGCGCGACUGUUCGGCUUGAAAUGCCAACUAGGCGAGU-----GUUAUAGUAA ((.(((..(((((((.((......)).))))...((((..((((..((.(((....)))))))))..)))).)))..))).))-----.......... ( -26.50) >DroEre_CAF1 11946 89 + 1 CCAUGCAAAGUGCAGGUGCACAUUCAGCUGCAGCGGCGUGGCAACUGCGCGACUGUUCGGCAUGAAAUGCCAACUAGGCAAGU-----GUU----UAA ((.(((.....))))).((((.((((((((.(((((((((.(....))))).))))))))).)))).((((.....)))).))-----)).----... ( -31.20) >DroYak_CAF1 11893 89 + 1 ACAUGCAAAGUGCAGGUGCACAUUCAGCUGCAGCGGCGAGGCAACUGCGCGACUGUGUGGCAUGAAAUGCCAGCUAGGCAAGU-----GCU----UAA .((((((..((((((.(((....((.((((...)))))).))).))))))...))))))((((....((((.....)))).))-----)).----... ( -32.10) >consensus ACAUGCAAAGUGCAGGUGCACAUUCAGCUGCAGCGGCAAGGCAACUGCGCGACUGUUCGGCUUGAAAUGCCAACUAGGCGAGU_____GUU_UAGUAA .........((((....)))).((((((((((((((((.(....)))).)).))))..))).)))).((((.....)))).................. (-25.62 = -25.34 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:54 2006