Locus 616

Sequence ID 2R_DroMel_CAF1
Location 3,116,965 – 3,117,063
Length 98
Max. P 0.685206
window1107

overview

Window 7

Location 3,116,965 – 3,117,063
Length 98
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 89.64
Mean single sequence MFE -30.08
Consensus MFE -25.62
Energy contribution -25.34
Covariance contribution -0.28
Combinations/Pair 1.08
Mean z-score -1.41
Structure conservation index 0.85
SVM decision value 0.32
SVM RNA-class probability 0.685206
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 3116965 98 + 20766785
ACAUGCAAAGUGCAGGUGCACAUUCAGCUGCAGCGGCAAGGCAACUGCGCGACUGUUCGGCUUGAAAUGCCAACUAGGCGAGUGCUGUGUUGUAGUAA
...(((....(((((.((......)).)))))((((((.((((.((.(((....(((.(((.......))))))...))))))))).)))))).))). ( -32.30)
>DroSec_CAF1 12378 93 + 1
ACAUGCAAAGUGCAGGUGCACAUUCAGCUGCAGCGGCAAGUCAACUGCGCCACUGUUCGGCUUGAAAUGCCAACUAGGCGAGU-----GUUAUAGUAA
((.(((.....))).))((((.(((((((((((.(((.((....))..))).))))..))).)))).((((.....)))).))-----))........ ( -28.30)
>DroSim_CAF1 12411 93 + 1
ACAUGCAAAGUGCAGGUGCACAUUCAGCUGCAGCGGCAAGUCAACUGCGCGACUGUUCGGCUUGAAAUGCCAACUAGGCGAGU-----GUUAUAGUAA
((.(((..(((((((.((......)).))))...((((..((((..((.(((....)))))))))..)))).)))..))).))-----.......... ( -26.50)
>DroEre_CAF1 11946 89 + 1
CCAUGCAAAGUGCAGGUGCACAUUCAGCUGCAGCGGCGUGGCAACUGCGCGACUGUUCGGCAUGAAAUGCCAACUAGGCAAGU-----GUU----UAA
((.(((.....))))).((((.((((((((.(((((((((.(....))))).))))))))).)))).((((.....)))).))-----)).----... ( -31.20)
>DroYak_CAF1 11893 89 + 1
ACAUGCAAAGUGCAGGUGCACAUUCAGCUGCAGCGGCGAGGCAACUGCGCGACUGUGUGGCAUGAAAUGCCAGCUAGGCAAGU-----GCU----UAA
.((((((..((((((.(((....((.((((...)))))).))).))))))...))))))((((....((((.....)))).))-----)).----... ( -32.10)
>consensus
ACAUGCAAAGUGCAGGUGCACAUUCAGCUGCAGCGGCAAGGCAACUGCGCGACUGUUCGGCUUGAAAUGCCAACUAGGCGAGU_____GUU_UAGUAA
.........((((....)))).((((((((((((((((.(....)))).)).))))..))).)))).((((.....)))).................. (-25.62 = -25.34 +  -0.28) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:54 2006