Locus 6156

Sequence ID	2R_DroMel_CAF1
Location	19,372,702 – 19,372,793
Length	91
Max. P	0.541144

overview

Window 6

Location	19,372,702 – 19,372,793
Length	91
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	96.10
Mean single sequence MFE	-24.72
Consensus MFE	-18.92
Energy contribution	-18.92
Covariance contribution	-0.00
Combinations/Pair	1.00
Mean z-score	-1.99
Structure conservation index	0.77
SVM decision value	0.02
SVM RNA-class probability	0.541144
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19372702 91 - 20766785
UGCUCGCA-UUAC-CCCAUCGCAGUAAUAAAUACUGCAAUGUUUUGAUACAGUCUAUAUUCGUUUUCAAUGAUUCAGCAAGGCGGUGAGUGCC
.((((((.-....-......((((((.....))))))..(((((((....((((................))))...)))))))))))))... ( -21.89)
>DroSec_CAF1 5436 91 - 1
UGCUCGCA-UUAC-CCCAUCGCAGUAAUAAAUACUGCAAUGUUUUGAUACAGUCUAUAUUCGUUUGCAAUGAUUCAGAAAGGCGGUGAGUGCA
.....(((-((((-(((...((((((.....))))))....((((((..((...((........))...))..)))))).)).))))).))). ( -22.60)
>DroSim_CAF1 5531 91 - 1
UGCUCGCA-UUAC-CCCAUCGCAGUAAUAAAUACUGCAAUGUUUUGAUACAGUCUAUAUUCGUUUGCAAUGAUUCAGAAAGGCGGUGAGUGCA
.....(((-((((-(((...((((((.....))))))....((((((..((...((........))...))..)))))).)).))))).))). ( -22.60)
>DroEre_CAF1 8639 93 - 1
UGCUCGCAAUUACCCCCAUCGCAGUAAUAAAUACUGCAAUGUUUUGAUACAGUGUAUAUUCGUUUGCAAUGUUUCAGCAAGGCGGUGAGUGCA
.....(((.(((((.((...((((((.....))))))..(((..(((.(((.((((........)))).))).)))))).)).))))).))). ( -29.60)
>DroYak_CAF1 8401 93 - 1
UGCUCGCAAUUACCCCCAUCGCAGUAAUAAAUACUGCAAUGUUUUGAUACAGUGUAUAUUCGUUUGCAAUGAUUCAGCAAGGCGGUGAGUGCA
.....(((.(((((.((...((((((.....))))))..(((..(((..((.((((........)))).))..)))))).)).))))).))). ( -26.90)
>consensus
UGCUCGCA_UUAC_CCCAUCGCAGUAAUAAAUACUGCAAUGUUUUGAUACAGUCUAUAUUCGUUUGCAAUGAUUCAGCAAGGCGGUGAGUGCA
.((((((.........(((.((((((.....)))))).)))...................(((((..............)))))))))))... (-18.92 = -18.92 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:16 2006