Locus 6155

Sequence ID 2R_DroMel_CAF1
Location 19,370,385 – 19,370,479
Length 94
Max. P 0.642220
window9865

overview

Window 5

Location 19,370,385 – 19,370,479
Length 94
Sequences 4
Columns 107
Reading direction reverse
Mean pairwise identity 73.91
Mean single sequence MFE -22.70
Consensus MFE -15.51
Energy contribution -16.70
Covariance contribution 1.19
Combinations/Pair 1.19
Mean z-score -1.46
Structure conservation index 0.68
SVM decision value 0.23
SVM RNA-class probability 0.642220
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19370385 94 - 20766785
-----------AUUUCAAAUGAA-CACG-AUGCGCAAUGCUGCCAAGUUUUUUUUUGGUAUAGCUGAUGGGCAGCACUGCAAGGUUUGGUAUUUUAUUCGACAGUAC
-----------...((.((((((-.((.-(.(((((.(((((((.((((............))))....))))))).)))...)).).))..)))))).))...... ( -21.50)
>DroSec_CAF1 3156 91 - 1
-----------AUUUCAAAUGAA-CCCG-AUACGCAAUGCUGCCAAGUUACUUAU---GAUAGCUGAUGGGUAUCAUUGCAAGAUUUAGUAUUUUUUACGACAGUAC
-----------............-....-.(((((((((.((((.((((((....---).)))))....)))).))))))........(((.....)))....))). ( -18.80)
>DroSim_CAF1 3204 91 - 1
-----------AUUUCAAAUGAA-CACG-AUACGCAAUGCUGCCAAGUUACUUAU---GAUAGCUGAUGGGUAGCAUUGGAAGUUUUAGUAUUUUAUACGACAGUAC
-----------............-....-.(((.((((((((((.((((((....---).)))))....))))))))))...(((.((........)).))).))). ( -21.10)
>DroYak_CAF1 3123 100 - 1
UUAACUUUUCGAAUUCAAAUCUUCGGUGAAAGCACAAUGCUGCCUAGCUGUUU-------UCGCUGCUGGGCAGCACUGCUAGUUUUAGUAUUUCAUAUGACAGUAC
...(((...((((........))))((((((......(((((((((((.((..-------..)).))))))))))).(((((....))))))))))).....))).. ( -29.40)
>consensus
___________AUUUCAAAUGAA_CACG_AUACGCAAUGCUGCCAAGUUACUUAU___GAUAGCUGAUGGGCAGCACUGCAAGUUUUAGUAUUUUAUACGACAGUAC
.................................(((((((((((.(((((..........)))))....)))))))))))........................... (-15.51 = -16.70 +   1.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:15 2006