| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,367,692 – 19,367,794 |
| Length | 102 |
| Max. P | 0.809044 |
| Location | 19,367,692 – 19,367,794 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 74.36 |
| Mean single sequence MFE | -34.65 |
| Consensus MFE | -21.92 |
| Energy contribution | -20.95 |
| Covariance contribution | -0.97 |
| Combinations/Pair | 1.53 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.809044 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19367692 102 - 20766785 ACCGCCAGGACGGCGGCAG------CCAGUACAACAGUCGCCAGUCGAAUUUUCACGGAAUGAACCAGCCG---CAUAACGGCAACGUGGGCGGCAGCAACGGCUGGAUGA .(((((.....)))))...------............((((((((((.........((......)).((((---(...(((....)))..))))).....))))))).))) ( -40.80) >DroEre_CAF1 544 102 - 1 AUCGCCAGGACGGCGGCAG------CCAGUACAGCAGUAGGCAAGCGAAUUAUCACGGAAUGAACCAGCCU---CACAACGGGAACGUGGGCGGCAGCAACGGCUGGAUGA .(((((.....)))))(((------((......((.....))..((..........((......)).(((.---(...(((....)))..).))).))...)))))..... ( -32.00) >DroWil_CAF1 609 108 - 1 AUCGCCAGGAUGGUGGCGGCGGUAUUCCCUAUAAUAG---GCCAAAUAAUUUUCAUGGCAUGAAUCAACCGCAGCACAACGGCAACGUUGGCGGCAGUGGCGGUUGGAUGA ((((((((((...((((...((....))(((...)))---)))).......))).))))......(((((((.((.(((((....)))))...))....)))))))))).. ( -36.90) >DroYak_CAF1 547 102 - 1 AUCGCCAGGACGGCGGCAG------CCAGUACAGCAGUAGGCAGGCGAAUUUUCACGGAAUGAACCAGCCC---CACAACGGCAACGUGGGCGGCAGCAACGGCUGGAUGA .(((((.....)))))(((------((......((.....))..((..........((......)).((((---(...(((....))).)).))).))...)))))..... ( -35.20) >DroMoj_CAF1 558 96 - 1 ACCGCCAAGAUGCAGGUAU------UCCCUAUAAUA---GGCAGAAUAAUUUUCAUGGCAUGAACCAGCCA---CACAAUGGCAACGUAGG---CAAUAGCGGUUGGAUGA ...((((.((......(((------((((((...))---))..)))))....)).)))).....((((((.---..(.(((....))).)(---(....)))))))).... ( -27.00) >DroAna_CAF1 533 99 - 1 AUCGUCAGGAUGGCGGCUC------CUCCUAUAA---UAGACAGGCAUUUCAUGGUGGAAUGAACCAGCCG---CACAACGGCAACGUGGGCGGCAGUAACGGCUGGAUGA .(((((((((.((.....)------)))))....---....(((.(......((((.......))))((((---(...(((....)))..)))))......).)))))))) ( -36.00) >consensus AUCGCCAGGACGGCGGCAG______CCACUACAACAGUAGGCAGGCGAAUUUUCACGGAAUGAACCAGCCG___CACAACGGCAACGUGGGCGGCAGCAACGGCUGGAUGA .(((((.....)))))................................................((((((......(.(((....))).)((....))...)))))).... (-21.92 = -20.95 + -0.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:14 2006