Locus 6153

Sequence ID 2R_DroMel_CAF1
Location 19,360,442 – 19,360,562
Length 120
Max. P 0.662599
window9863

overview

Window 3

Location 19,360,442 – 19,360,562
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 82.28
Mean single sequence MFE -39.87
Consensus MFE -26.52
Energy contribution -25.00
Covariance contribution -1.52
Combinations/Pair 1.55
Mean z-score -1.92
Structure conservation index 0.67
SVM decision value 0.27
SVM RNA-class probability 0.662599
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19360442 120 - 20766785
ACGAUCGCAUGGUUCGUGGCGUUCAUGUGCGCAUUGAGCGGGAAAUUGCACUCGCCGCUGCAGUAGAAGGCGCCAUAGCCCUCUGGUGCGAUGAUCCAGUCAUGCCAGCCCAGAUCCUUG
..((((((.((((..(((((..((((.((((((((((((((((........)).))))).))))(((.(((......))).))).)))))))))....)))))))))))...)))).... ( -42.60)
>DroVir_CAF1 914 120 - 1
ACAAUUGCGUGAUUCGUGGCAUUCAUGUGCGCAUUUAGCGGAAAAUUGCACUCUCCACUGCAAUAGAAGGCGCCGUAGCCCUCCGGCGCGAUUAUCCAGUCAUGCCAGCCCAAAUCCUUA
......((((((((.(((((((....)))).))).....(((..((((((........)))))).....((((((........)))))).....)))))))))))............... ( -34.20)
>DroGri_CAF1 926 120 - 1
ACAAUCGCAUGAUUCGUCGCAUUCAUAUGGGCGUUAAGUGGGAAAUUACAUUCACCGCUGCAAUAAAACGCACCAUAGCCAUCCGGUGCGAUUAUCCAAUCGUGCCAGCCGAGAUCCUUA
......((((((((.(((((.....((((((((((.((((((((......))).))))).......))))).)))))(((....)))))))).....))))))))............... ( -35.50)
>DroWil_CAF1 1096 120 - 1
ACAAUGGCAUGAUUGGUUGCAUUCAUGUGCGCAUUUAGGGGAAAACUGCAUUCCCCGCUGCAAUAGAAUGCCCCGUAACCCUCUGGGGCAAUUAUCCAAUCAUGCCAACCCAAAUCCUUA
....((((((((((((..((((....))))(((....((((((.......))))))..))).......(((((((........))))))).....))))))))))))............. ( -48.60)
>DroMoj_CAF1 914 120 - 1
ACGAUCGCAUGAUUCGUGGCGUUCAUAUGCGCAUUAAGUGGAAAAUUGCAUUCGCCGCUGCAGUAAAAGGCACCGUAGCCAUCUGGCGCAAUGAUCCAAUCGUGCCAGCCCAGAUCCUUG
..((((((((((((....((((......)))).......(((..(((((....(((............)))......(((....))))))))..))))))))))).......)))).... ( -35.41)
>DroAna_CAF1 1085 120 - 1
ACGAUUGCAUGGUUGGUGGCGUUCAUAUGGGCGUUUAGCGGAAAGUUGCACUCGCCGCUGCAAUAGAACGCUCCAUACCCUUCCGGGGCGAUGAUCCAGUCGUGCCAAAGCAGAUCCUUA
..((((((..((((((.(((((((.(((..((....(((((..((.....))..))))))).))))))))))))).))).....((.(((((......))))).))...))).))).... ( -42.90)
>consensus
ACAAUCGCAUGAUUCGUGGCAUUCAUAUGCGCAUUUAGCGGAAAAUUGCACUCGCCGCUGCAAUAGAAGGCACCAUAGCCCUCCGGCGCGAUGAUCCAAUCAUGCCAGCCCAGAUCCUUA
......((((((((.(((.(((....)))))).......(((..((((((........)))))).....((((((........)))))).....)))))))))))............... (-26.52 = -25.00 +  -1.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:13 2006