| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,359,079 – 19,359,192 |
| Length | 113 |
| Max. P | 0.677486 |
| Location | 19,359,079 – 19,359,192 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 81.06 |
| Mean single sequence MFE | -32.77 |
| Consensus MFE | -17.68 |
| Energy contribution | -17.49 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.677486 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19359079 113 - 20766785 UGUGUAUCUUAAUCUUCAAGAUGCAUUUUCUUUCUAUUUCGCGGGAGUUGGCAGUCCCGCGACUUGGAAAAUGAAUCGGUCUUGAAGAUCGAAC---UAGAAGAUC---CAACAUAGUA ((((((((((.(((((((((((..((((..((((((..((((((((.(....).))))))))..))))))..))))..))))))))))).....---...))))).---..)))))... ( -40.60) >DroSec_CAF1 2129 113 - 1 UGUGUAUCUUAAUCUUCAAGAUGCAUUUUCUUUCUAUUUCGCGGGAGUUGGCAGUCCCGCGUCUUGGAAAAUGAAUCGGUCUUGAAGAUCGAAC---UAGAAGAUC---CACCAUAGUA .(((.(((((.(((((((((((..((((..((((((...(((((((.(....).)))))))...))))))..))))..))))))))))).....---...))))).---)))....... ( -39.50) >DroSim_CAF1 2140 113 - 1 UGUGUAUCUUAAUCUUCAAGAUGCAUUUUCUUCCUAUUUCGCGGGAGUUGGCAGUCCCGCGUCUUGAAAAAUGAAUCGGUCUUGAAGAUCGAAC---UAGAAGAUC---CACCAUAGUA .(((.(((((....((((((((((.....(((((........)))))..((.....)))))))))))).......((((((.....))))))..---...))))).---)))....... ( -32.90) >DroEre_CAF1 2157 116 - 1 UGUGUAUCUUAAUCUUCAAGAUGCAUUUUCUUUCUAUUUCGGGGGAGUUGGCAGUCCUACAUCUUGGAAAAUGAAUCGGUCAUUAAGAUCGAAC---UAGAAGAUCCGCCACUAUAGUA .(((((((((.......))))))))).......((((...((.(((.((((((.(((........)))...))..((((((.....)))))).)---)))....))).))...)))).. ( -29.30) >DroYak_CAF1 2148 116 - 1 UGUGUAUCUUAAUCUUCAAGAUGCAUUUUCUUUCAAUUUCGGGGGAGUUGGCAGCCCCGCGUCUUGGAAAAUGAAUCGGUCUUUAAGAUCGAAC---UAGAAGAUCAGCCGCUAUAGUA .(((...((..((((((.((...((((((((........(((((..(....)..)))))......))))))))..((((((.....)))))).)---).)))))).)).)))....... ( -29.94) >DroAna_CAF1 1771 96 - 1 UGUGUAUCUUAAUCUUGAAGAUGCAUUUUCUUUGUGUUCUUCGCAGGUUGGCAGGG--------------------CGAUCUUCAGGGCUGCACAAUUUUAAGAGG---CGCCAUUGUA .((((.((((((....(((((.((((.......)))))))))((((.(..(.(((.--------------------...))).)..).))))......)))))).)---)))....... ( -24.40) >consensus UGUGUAUCUUAAUCUUCAAGAUGCAUUUUCUUUCUAUUUCGCGGGAGUUGGCAGUCCCGCGUCUUGGAAAAUGAAUCGGUCUUGAAGAUCGAAC___UAGAAGAUC___CACCAUAGUA ((((.......((((((....(((...((((..(......)..))))...)))......................((((((.....)))))).......)))))).......))))... (-17.68 = -17.49 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:12 2006