| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,347,582 – 19,347,696 |
| Length | 114 |
| Max. P | 0.638352 |
| Location | 19,347,582 – 19,347,696 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 78.05 |
| Mean single sequence MFE | -15.57 |
| Consensus MFE | -11.46 |
| Energy contribution | -11.63 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.05 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.638352 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19347582 114 + 20766785 CCACCAUUCCUUACUCUGCCUUCUCCUCAUGCAUAAUCGGAAUUAACUACAAACACAUUAAUCCGGCCAAAUAGAGGGGCA---UUUCCUACUU-UCUAUAUUUCAGAUUUACACAUU ..............((((..................(((((.((((...........)))))))))....((((((((...---.......)))-)))))....)))).......... ( -13.00) >DroSec_CAF1 9912 102 + 1 CCACCAUUCCUCACUCUGCCUUCUCCUCAUGCAUAAUCGGAAUUAACUACAAAUACAUUAAUCCGGCCAAAUAGAGGGGCA---UU---------UCUAUAUUUUAGAUUG----AUU ..........(((...((((....((((........(((((.((((...........))))))))).......))))))))---..---------((((.....)))).))----).. ( -14.46) >DroSim_CAF1 10359 103 + 1 CCACCAUUCCUCACUCUGCCUUCUCCUCAUGCAUAAUCGGAAUUAACUACAAAUACAUUAAUCCGGCCAAAUAGAGGGGCA---UU-------U-UCUAUAUUUUAGAUUG----AUU ..........(((...((((....((((........(((((.((((...........))))))))).......))))))))---..-------.-((((.....)))).))----).. ( -14.46) >DroEre_CAF1 10233 100 + 1 CCACCAUUCCUCACUCUGCCUUCUCCUCAUGCAUAAACGGAAUUAACUACAGUCUCAUUAAUCCGGCCAAAUAGAGGGGCA---UU-UCUACUUU--------C--AAUAG----AUU ................((((....((((.........((((.((((...........))))))))........))))))))---..-((((....--------.--..)))----).. ( -13.03) >DroYak_CAF1 10384 108 + 1 CCACCAUUCCUCACUCUGCCUUCUCCUCAUGCAUAAUCGGAAUUAACUACAAACUCAUUAAUCCGGCCAAAUAGAGGGGCACAUUU-UCUACUUUUCUAUACUC--AAUAA------- ................((((....((((........(((((.((((...........))))))))).......)))))))).....-.................--.....------- ( -12.46) >DroAna_CAF1 10686 102 + 1 CCACCAUAUUCUGAUCUGCCU---CCUCUCGCAUAAUCGGCAUUAAUUACAAUUAAAUUAAUCCGGCCAAAGAGAGGGGCU---UU-UUGAGUUU-UUAAA--C--GAUAG----AUU .........((((.((.(((.---((((((......((((.(((((((.......))))))))))).....))))))))).---..-....(((.-...))--)--)))))----).. ( -26.00) >consensus CCACCAUUCCUCACUCUGCCUUCUCCUCAUGCAUAAUCGGAAUUAACUACAAACACAUUAAUCCGGCCAAAUAGAGGGGCA___UU_UCUACUU_UCUAUAUUC__GAUAG____AUU .................(((....((((........((((.(((((...........))))))))).......)))))))...................................... (-11.46 = -11.63 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:10 2006