Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 3,116,756 – 3,116,847 |
Length | 91 |
Max. P | 0.695577 |
Location | 3,116,756 – 3,116,847 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 83.00 |
Mean single sequence MFE | -32.24 |
Consensus MFE | -23.84 |
Energy contribution | -25.64 |
Covariance contribution | 1.80 |
Combinations/Pair | 1.19 |
Mean z-score | -1.73 |
Structure conservation index | 0.74 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.695577 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3116756 91 + 20766785 UUUUGGCAGGCUCGCCGAGUGCAUUUGUGUGUGGUGGUUGUGUGGUGCCUGGAUUGCAUACUGCACCCGAAUGCCAG-CUCUUCGCACACCC ...((((.((....))(((((((((((.(((..((....(((..((......))..)))))..))).)))))))..)-)))...)).))... ( -29.90) >DroSec_CAF1 12174 92 + 1 UUUUGGCAGGCUCGCCGAGUGCAUUUGUGUGUGGUGGUUGUGUGUUGCCUGGAUUGCACACUGCACACCAAUGCAUUGCUCUUCGCACACCC ..(((((......)))))(((((((.(((((..(((((.((.(.......).)).)).)))..))))).)))))))(((.....)))..... ( -31.50) >DroSim_CAF1 12208 91 + 1 UUUUGGCAGGCUCGCCGAGUGCAUUUGUGUGUGGUGGUUGUGUGUUGCCUGGAUUGCACACAGCACACCAAUGCAAUGC-CUUCGCACACCC ...((((.((....))(((.(((((.((((.((((((((((((((..........))))))))).))))))))))))))-.))))).))... ( -34.80) >DroEre_CAF1 11756 78 + 1 ---UGGCAGGCUGGCCAAGUGCAUUUGUGUGUGGUGGUUGUGUGGUGCCUGGAUUGCA--CUGCAUACAAAUGCCAC-CC----ACAC---- ---((((......)))).........(((((.((((((((((..((((.......)))--)..)))).....)))))-))----))))---- ( -33.10) >DroYak_CAF1 11673 86 + 1 ---UGGCAGGCUUGCCAAGUGCAUUUGUGUGCGGUGGUUGUGUGGUGCCUCGAUUGCA--AUGCAUACAAAUGCCAG-CUCUGCGCACACCC ---..(((((((......(.((((((((((((.(..((((...(....).))))..).--..)))))))))))))))-).))))........ ( -31.90) >consensus UUUUGGCAGGCUCGCCGAGUGCAUUUGUGUGUGGUGGUUGUGUGGUGCCUGGAUUGCA_ACUGCACACAAAUGCCAG_CUCUUCGCACACCC ..(((((......)))))..(((((((((((((((....(((((((......)))))))))))))))))))))).................. (-23.84 = -25.64 + 1.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:53 2006