| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,344,553 – 19,344,647 |
| Length | 94 |
| Max. P | 0.545632 |
| Location | 19,344,553 – 19,344,647 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 82.05 |
| Mean single sequence MFE | -46.78 |
| Consensus MFE | -27.30 |
| Energy contribution | -28.10 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.545632 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19344553 94 + 20766785 AAGACGAUUGUCCCUUCAGCGGGAAGUGGCAAG------------G---------GCGAUGUGCCCAGCAGCCGAAGCACGGAUACUCCACCGCCUGCAAAGGGCGCCGCCAGCA .......(((((.((((.....)))).))))).------------(---------(((..((((((.((((.((......((.....))..)).))))...)))))))))).... ( -32.60) >DroSec_CAF1 6852 106 + 1 AAGCCGAUUGCCCCUUCAGGGGGAAGUGGCAAGGCGGCUACAUCGG---------GCGAUGUGCCCAGCAGCCGGAGCACGGAUACUCCACCGCCUACAAAGGGUGCCGCCAGCA ..((((.((.((((....)))).)).))))..((((((.((...((---------(((..((((((.......)).))))((.....))..))))).......)))))))).... ( -47.90) >DroSim_CAF1 7299 106 + 1 AAGCCGAUUGCCCCUUCAGCGGGAAGUGGCAAGGCGGCUACAUCGG---------GCGAUGUGCUCAGCAGCCGGAGCACGGAUACUCCACCGCCUGCAAAGGGUGCCGCCAGCA ..((...(((((.((((.....)))).)))))((((((.((..(((---------(((..((((((........))))))((.....))..))))))......)))))))).)). ( -48.60) >DroEre_CAF1 7116 112 + 1 AAGCCGAUUGCCCCAUCAGCGGGAAGUGGCAAGGUGGCCACGUCGG---GUCCAGCCGAACUGUCCAGCAGCCGGAGCACGGAUAAUCCACCGGCUGCAAAGGGCGCGGCCAGCA ..((((....((((....).)))...))))..(.(((((.((((((---(..(((.....)))))).((((((((.....((.....)).))))))))....)))).))))).). ( -50.60) >DroYak_CAF1 7208 115 + 1 AAGCCCAUUGCCCCUUCAGCGGCAAGUGGCAAGGUGGCCACCACAGGUGGUCCAGUCGAUGUGUCCAGCAGCCGGAGCACGGAUAAUCCCCCGGCUGCAAAGGGCGCGGCCAGCA ..(((..(((((.(....).)))))..)))..(.(((((((((....)))).........((((((.((((((((.(...((.....)))))))))))...))))))))))).). ( -54.20) >consensus AAGCCGAUUGCCCCUUCAGCGGGAAGUGGCAAGGCGGCCACAUCGG_________GCGAUGUGCCCAGCAGCCGGAGCACGGAUACUCCACCGCCUGCAAAGGGCGCCGCCAGCA ..(((..(((((.((((.....)))).)))))...)))......................((((((.((((.(((.....((.....)).))).))))...))))))........ (-27.30 = -28.10 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:09 2006