Locus 6146

Sequence ID 2R_DroMel_CAF1
Location 19,342,206 – 19,342,297
Length 91
Max. P 0.638945
window9846

overview

Window 6

Location 19,342,206 – 19,342,297
Length 91
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 64.60
Mean single sequence MFE -21.23
Consensus MFE -10.72
Energy contribution -9.23
Covariance contribution -1.49
Combinations/Pair 1.82
Mean z-score -1.36
Structure conservation index 0.51
SVM decision value 0.22
SVM RNA-class probability 0.638945
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19342206 91 + 20766785
AGUAAGUUUCAUUAUAUUCCGAUUGGCUUAGCAGCGAUAAGUCCUGCGGAUGAGAUGAGUACC-------ACCUUGGUACCACACCAUGGUUACAAGU
.(((.((((((((.(((.(((...((((((.......))))))...)))))).)))))).)).-------(((.((((.....)))).)))))).... ( -23.40)
>DroSec_CAF1 4506 78 + 1
AGUAAGUUUCAUAGUAUUCCGAUGGGCUUAGCAGCGAUAAGUCCUGCGGAUGAGAUGAGUACC-------ACCUUG-------------GUUACAAAU
........((((..(((.(((..(((((((.......)))))))..))))))..))))(((((-------.....)-------------).))).... ( -20.70)
>DroSim_CAF1 4485 78 + 1
AGUAAGUUUCAUAGUAUUCCGAUGGGCUUAGCAGCGGUAAGUCCUGCGGAUGAGAUGAGUACC-------ACCUUG-------------GUUACAAAU
........((((..(((.(((..(((((((.(...).)))))))..))))))..))))(((((-------.....)-------------).))).... ( -20.80)
>DroEre_CAF1 4723 85 + 1
AGUAAGUUUUACAGUAUUCCGAUGGGCUUAACAGCGAUGGGUCCACGGGGUGCGAUGAGUACCCUUUGUAGCCAUG-------------GCUACAAAU
.....((((((..((((((((.((((((((.......))))))))))))))))..)))).))..((((((((....-------------)))))))). ( -31.60)
>DroWil_CAF1 9846 74 + 1
AGUGAGUAGAGAAGUUUGUCCAUUGAGUAAGAUCGAGCAAUUUAUGCAAAAGG--UUUAUUGG-------GAUUUG-------------CUUUC--AU
........((((.((..((((.((((......))))(((.....)))......--.......)-------)))..)-------------)))))--.. ( -13.60)
>DroYak_CAF1 4856 76 + 1
AGUAAGUUUUAUAGUAUUCCGAUGGACUUAGACGCGAUAAGUCCACUGGGUGAAAUGAGU---------UACCAUG-------------GCUGCAAAU
.............(((..(((.((((((((.......))))))))...(((((......)---------)))).))-------------).))).... ( -17.30)
>consensus
AGUAAGUUUCAUAGUAUUCCGAUGGGCUUAGCAGCGAUAAGUCCUGCGGAUGAGAUGAGUACC_______ACCUUG_____________GUUACAAAU
........((((..(((.(((..(((((((.......)))))))..))))))..))))........................................ (-10.72 =  -9.23 +  -1.49)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:58 2006