| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,334,467 – 19,334,565 |
| Length | 98 |
| Max. P | 0.950472 |
| Location | 19,334,467 – 19,334,565 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 80.24 |
| Mean single sequence MFE | -32.25 |
| Consensus MFE | -23.66 |
| Energy contribution | -24.72 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.73 |
| SVM decision value | 1.40 |
| SVM RNA-class probability | 0.950472 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19334467 98 - 20766785 ACUUGAACCCACGAAGGCUGCCCACAAGCGGCAAACAAAGCGAGCGGCGACCUUCGACCCCUCCCCCCGCUCCACACCCUAGGCGAAAGUGGGUGAAA----- ......(((((((((((.((((.....((.((.......))..)))))).)))))............((((..........))))...))))))....----- ( -29.20) >DroSec_CAF1 12454 94 - 1 ACUUGAACCCACGAAGGCUGCCCACAAGCGGCAAACAAAGCGAGCGGCGACCUUCGACCCU---CACCACCCCACCCCCU-GGUGAAAGUGGGUGGAA----- ......(((((((((((.((((.....((.((.......))..)))))).))))).....(---(((((..........)-)))))..))))))....----- ( -32.40) >DroEre_CAF1 12549 84 - 1 ACUUGAACCCACGAAGGCUGCCCACAAGCGGCAAACAAAG-GAGAGGCGACCUUCGCC-----------------CCCCU-GGCGAAAGUGGGUGAAAGUGGG ((((..((((((....(((((......)))))......((-(.(.((((.....))))-----------------.))))-.......))))))..))))... ( -33.40) >DroYak_CAF1 12878 85 - 1 ACUUGAACCCACGAAGGCUGCCCACAAGCGGCGAACAAAGCGAGAGGCGACCUUCGCC-----------------CCCCU-GGCGAAAGUGGGUGAAAGUAGG ((((..((((((....(((((......))))).......((.((.((((.....))))-----------------...))-.))....))))))..))))... ( -34.00) >consensus ACUUGAACCCACGAAGGCUGCCCACAAGCGGCAAACAAAGCGAGAGGCGACCUUCGAC_________________CCCCU_GGCGAAAGUGGGUGAAA_____ ((((..((((.((((((.((((.....((..........))....)))).))))))..........................((....))))))..))))... (-23.66 = -24.72 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:51 2006