Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 19,332,812 – 19,332,912 |
Length | 100 |
Max. P | 0.896588 |
Location | 19,332,812 – 19,332,912 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 93.33 |
Mean single sequence MFE | -27.20 |
Consensus MFE | -23.73 |
Energy contribution | -23.73 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.08 |
Mean z-score | -2.12 |
Structure conservation index | 0.87 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.737045 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19332812 100 + 20766785 UUGUGGAGAUAUGAUUUCUACGAAAGUGCAGAUGUGAUCAAGCUUGCAUUUCGCUUGGCAACACACUCGUGAAUAACAAGUAUAUUCACACGAAUUCAAA ((((((((((...))))))))))(((((.(((((..(......)..))))))))))(....)......(((((((.......)))))))........... ( -24.80) >DroSec_CAF1 10831 100 + 1 UUGUGAAGAUAUGGUUUCUAGGAAACGACAGAAGUGAUCAAGCUUGCAUUUCGCUUGGCAACACACUCGUGAAUAACGAGUGUAUUCACACGAGUUCAAA .((((((........((((.(....)...))))((..((((((.........))))))..))((((((((.....)))))))).)))))).......... ( -28.40) >DroSim_CAF1 10882 100 + 1 UUGUGAAGAUAUGGUUUCUAGGAAACGGCAGAAGUGAUCAAGCUUGCAUUUCGCUUGGCAACACACUCGUGAAUAACGAGUGUAUUCACACGAGUUCAAA .((((((........((((.(....)...))))((..((((((.........))))))..))((((((((.....)))))))).)))))).......... ( -28.40) >consensus UUGUGAAGAUAUGGUUUCUAGGAAACGGCAGAAGUGAUCAAGCUUGCAUUUCGCUUGGCAACACACUCGUGAAUAACGAGUGUAUUCACACGAGUUCAAA .((((((.........(((.(....)...))).((..((((((.........))))))..))((((((((.....)))))))).)))))).......... (-23.73 = -23.73 + 0.00)
Location | 19,332,812 – 19,332,912 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 93.33 |
Mean single sequence MFE | -25.10 |
Consensus MFE | -23.07 |
Energy contribution | -22.63 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.08 |
Mean z-score | -2.23 |
Structure conservation index | 0.92 |
SVM decision value | 0.99 |
SVM RNA-class probability | 0.896588 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19332812 100 - 20766785 UUUGAAUUCGUGUGAAUAUACUUGUUAUUCACGAGUGUGUUGCCAAGCGAAAUGCAAGCUUGAUCACAUCUGCACUUUCGUAGAAAUCAUAUCUCCACAA ..(((.....(((((((((((((((.....))))))))))...(((((.........))))).)))))(((((......)))))..)))........... ( -24.70) >DroSec_CAF1 10831 100 - 1 UUUGAACUCGUGUGAAUACACUCGUUAUUCACGAGUGUGUUGCCAAGCGAAAUGCAAGCUUGAUCACUUCUGUCGUUUCCUAGAAACCAUAUCUUCACAA ..((((...((((((((((((((((.....)))))))))))..(((((.........)))))............(((((...)))))))))).))))... ( -25.30) >DroSim_CAF1 10882 100 - 1 UUUGAACUCGUGUGAAUACACUCGUUAUUCACGAGUGUGUUGCCAAGCGAAAUGCAAGCUUGAUCACUUCUGCCGUUUCCUAGAAACCAUAUCUUCACAA ..((((...((((((((((((((((.....)))))))))))..(((((.........)))))............(((((...)))))))))).))))... ( -25.30) >consensus UUUGAACUCGUGUGAAUACACUCGUUAUUCACGAGUGUGUUGCCAAGCGAAAUGCAAGCUUGAUCACUUCUGCCGUUUCCUAGAAACCAUAUCUUCACAA ..........(((((((((((((((.....)))))))))))..(((((.........)))))......((((........))))...........)))). (-23.07 = -22.63 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:47 2006