| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 3,114,000 – 3,114,096 |
| Length | 96 |
| Max. P | 0.805717 |
| Location | 3,114,000 – 3,114,096 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 79.87 |
| Mean single sequence MFE | -32.58 |
| Consensus MFE | -23.28 |
| Energy contribution | -23.37 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.805717 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 3114000 96 + 20766785 CGAAAAUGUCCGAGCAAGCCACUUCCGCCGC-----UCCGGAAGUGGGCUAGGCCC-ACGUCCCAACUUGACCUUGCCCGACUUGCUGCAUCAAUCUAACG-----A .((..((((...((((((.((((((((....-----..)))))))((((.(((..(-(.((....)).)).))).))))).))))))))))...)).....-----. ( -30.50) >DroSec_CAF1 9384 96 + 1 CGAAAAUGUCCGAGCAAGCCACUUCCGCCGC-----UCCGGAAGUGGGCUAGGGCC-ACGUUCCCACUUGUCCUUGCCCGACUUGCUGCAUCAAUCUACCG-----A .((..((((...((((((.((((((((....-----..)))))))((((.(((((.-..((....))..))))).))))).))))))))))...)).....-----. ( -32.80) >DroSim_CAF1 9391 96 + 1 CGAAAAUGUCCGAGCAAGACACUUCCGCCGC-----UCCGGAAGUGGGCUAGGGCC-ACGUUCCCACUUAUCCUUGCCCGACUUGCUGCAUCAAUCUACCG-----A .((..((((...((((((..(((((((....-----..)))))))((((.((((..-..((....))...)))).))))..))))))))))...)).....-----. ( -29.20) >DroEre_CAF1 9282 96 + 1 CGAAAAUGUCCGAGCAGGCCACUUCCGCCGC-----UCCGGAAGUGGGCUAGGCCC-ACGUCCCAACUUGGCCUUGCCCGACUUGCUGCAUCCAUCUAGCA-----A .((..((((...((((((.((((((((....-----..)))))))((((.(((((.-..((....))..))))).))))).))))))))))...)).....-----. ( -35.30) >DroYak_CAF1 9586 96 + 1 CGUAAAUGUCCAAGUGAGCCACUUUCGCCUC-----UCCGGAAGUGGCCUAGGCCC-UCGCCCCAGCUUGGCCUUGCCCGACUUGCUGCAUCAAUCCAGCA-----A .((((..(.((((((..((((((((((....-----..))))))))))...(((..-..)))...))))))).))))......(((((........)))))-----. ( -32.70) >DroPer_CAF1 9504 104 + 1 AGAAAAUGUCAGAGAAAGCCACAUCCGCCUAGCCCAGCCGGAAGUGGGCAGGGCUCCGGGUCCGUGCCAGGACUUGCU--A-CUGCCGCAUCAAUCUGCCGGCUGCA .................((.......((((.(((((..(....)))))).))))..(((((((......)))))))..--.-..((((((......)).)))).)). ( -35.00) >consensus CGAAAAUGUCCGAGCAAGCCACUUCCGCCGC_____UCCGGAAGUGGGCUAGGCCC_ACGUCCCAACUUGGCCUUGCCCGACUUGCUGCAUCAAUCUACCG_____A .....((((...((((((..(((((((...........)))))))((((.(((((....((....))..))))).))))..))))))))))................ (-23.28 = -23.37 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:52 2006