Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 19,326,026 – 19,326,128 |
Length | 102 |
Max. P | 0.973704 |
Location | 19,326,026 – 19,326,128 |
---|---|
Length | 102 |
Sequences | 3 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 95.42 |
Mean single sequence MFE | -35.07 |
Consensus MFE | -33.37 |
Energy contribution | -33.70 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.66 |
Structure conservation index | 0.95 |
SVM decision value | 1.72 |
SVM RNA-class probability | 0.973704 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19326026 102 - 20766785 AUUCUAAAUACUUUUUGAACGGAUCGGUGCUGCAAAGCGCCGUUCCAAAGGCCAGUGCUGCAAGUCGGCUGAGUCGUAGCGCGGUGAAAUUCAAAUAAAUGC .............((((((.(((.(((((((....))))))).)))....(((.(((((((.(.((....)).).))))))))))....))))))....... ( -35.90) >DroSec_CAF1 3970 102 - 1 AUUUUAAACACUUCUUGAACGGAUCGGUGCUGCAAAGCGCCGUUCCACAGGCCAGUGCUGCAAGUCGGCUGAGUCGUAGCGCGGUUAAUUUCAAAUAAAUGC ..............(((((.(((.(((((((....))))))).)))...((((.(((((((.(.((....)).).)))))))))))...)))))........ ( -35.40) >DroSim_CAF1 4042 102 - 1 AUUUUAAAUACUUUUUGAACGGAUCGGUGCUGCAAAGCGCCUUUCCACAGGCCAGUGCUGCAAGUCGGCUGAGUCGUAGCGCGGUUAAAUUCAAAUAAAUGC .............((((((.(((..((((((....))))))..)))...((((.(((((((.(.((....)).).)))))))))))...))))))....... ( -33.90) >consensus AUUUUAAAUACUUUUUGAACGGAUCGGUGCUGCAAAGCGCCGUUCCACAGGCCAGUGCUGCAAGUCGGCUGAGUCGUAGCGCGGUUAAAUUCAAAUAAAUGC ..............(((((.(((.(((((((....))))))).)))....(((.(((((((.(.((....)).).))))))))))....)))))........ (-33.37 = -33.70 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:38 2006