| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,311,096 – 19,311,187 |
| Length | 91 |
| Max. P | 0.875593 |
| Location | 19,311,096 – 19,311,187 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 76.39 |
| Mean single sequence MFE | -18.65 |
| Consensus MFE | -12.69 |
| Energy contribution | -13.42 |
| Covariance contribution | 0.73 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.89 |
| SVM RNA-class probability | 0.875593 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19311096 91 + 20766785 ----------UAAUAAAUCGGCUU--UGUCUCGCAUCGCUAAUUGUUUGCCAUUAAUUUGCAUAACAAAAUUAAUUGGCGGCAUUUAUGCAAAUCCCGAAAGC ----------.......((((...--((.....))..(((((.((((.(((((((((((........))))))).)))))))).))).)).....)))).... ( -19.10) >DroVir_CAF1 62535 100 + 1 AACAAACUUAUUAUAAAUGGGCCUUUUGUCUUGAGCUGCUAAUUGCUGCUCAUUAAUUUGCAUG-UGAAAUUAAUUGCCAACAUUUAUGCAUU-GUCGA-GUC ...........(((((((((((.........(((((.((.....)).)))))(((((((.....-..)))))))..)))..))))))))....-.....-... ( -19.60) >DroEre_CAF1 53815 91 + 1 ----------UAAUAAAUCGGCUU--UGCCUCGCAUCGCUAAUUGUUUGUCAUUAAUUUGCAUAACAAAAUUAAUUGGCAGCAUUUAUGCAAAUCCCGAAAUC ----------.......((((.((--(((...((...))(((.((((.(((((((((((........))))))).)))))))).))).)))))..)))).... ( -18.60) >DroYak_CAF1 54986 91 + 1 ----------UAAUAAAUCGGCUU--UGUCUCGCAUCGCUAAUUGUUUGCCAUUAAUUUGCAUAACAAAAUUAAUUGGCAGCAUUUAUGCAAAUCCCGAAAUC ----------.......((((...--((.....))..(((((.((((.(((((((((((........))))))).)))))))).))).)).....)))).... ( -19.90) >DroMoj_CAF1 76883 100 + 1 ACAAAACUUAUUAUAAAUGGGCUUUUUGUCUUUGGCUGCUAAUUGCCACUCAUUAAUUUGCAUG-CGAAAUUAAUUGCCAACACUUAUGCAUU-GUUGA-GGC (((((((((((.....)))))..))))))...((((........))))((((......((((((-(((......))))........)))))..-..)))-).. ( -17.50) >DroAna_CAF1 58897 91 + 1 ----------UAAUAAAUCGGCUU--UGUCUCGCAACGCUAAUUGUUUGCCAUUAAUUUGCAUAACAAAAUUAAUUGGCGGCAUUUAUGCAAAUCCUAAAAUC ----------.....(((..((.(--((.....))).))..)))...((((((((((((........))))))).)))))(((....)))............. ( -17.20) >consensus __________UAAUAAAUCGGCUU__UGUCUCGCAUCGCUAAUUGUUUGCCAUUAAUUUGCAUAACAAAAUUAAUUGGCAGCAUUUAUGCAAAUCCCGAAAUC ...................(((.....))).......(((((.((.(((((((((((((........))))))).)))))))).))).))............. (-12.69 = -13.42 + 0.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:34 2006