Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 19,283,122 – 19,283,213 |
Length | 91 |
Max. P | 0.868336 |
Location | 19,283,122 – 19,283,213 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 97.36 |
Mean single sequence MFE | -20.08 |
Consensus MFE | -18.06 |
Energy contribution | -18.26 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.51 |
Structure conservation index | 0.90 |
SVM decision value | 0.86 |
SVM RNA-class probability | 0.868336 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19283122 91 - 20766785 CUCUGAAAAGUUUGGCCCUGAAACUGAAAACAAAUCCACGAAAUGCAUUUCAGCCACCUUUCAUAACGAGAGAGUGGCUUAUGUAAGAGCA ((((....(((((.......)))))..................(((((...(((((((((((.....))))).)))))).))))))))).. ( -23.10) >DroSec_CAF1 33080 91 - 1 CUCUGAAAAGUUUGGCCCUGAAACUGAAAACAAAUCCACGAAAUGCAUUUCAGCCACCUUUCAUAACGAGAGAGUGGCUUACGUAAGAGCA ((((....(((((.......)))))............((((((....))))(((((((((((.....))))).))))))...)).)))).. ( -20.10) >DroSim_CAF1 23470 91 - 1 CUCUGAAAAGUUUGGCCCUGAAACUGAAAACAAAUCCACGAAAUGCAUUUCAGCCACCUUUCAUAACGAGAGAGUGGCUUACGUAAGAGCA ((((....(((((.......)))))............((((((....))))(((((((((((.....))))).))))))...)).)))).. ( -20.10) >DroEre_CAF1 25964 91 - 1 CUCUGAAAAGUUUGGCCAUGAAACUGAAAACAAAUCCACGAAAUGCAUUUCAACCACCUUUCAUUACGAGAGAGUGGCUUACGUAAGAGCA ((((.....((..((((((....................((((....))))......(((((.....))))).)))))).))...)))).. ( -17.50) >DroYak_CAF1 23087 91 - 1 CUCUGAAAAGUUUGGCCCUGAAACUGAAAACAAAUCCACAAAAUGCAUUUCAGCCACCUUUCAUAAUGAGAGAGUGGCUUACGUAAGAGCA ((((....(((((.......)))))..................(((.....(((((((((((.....))))).))))))...))))))).. ( -19.60) >consensus CUCUGAAAAGUUUGGCCCUGAAACUGAAAACAAAUCCACGAAAUGCAUUUCAGCCACCUUUCAUAACGAGAGAGUGGCUUACGUAAGAGCA ((((....(((((.......)))))..................(((.....(((((((((((.....))))).))))))...))))))).. (-18.06 = -18.26 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:29 2006