| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 19,274,489 – 19,274,579 |
| Length | 90 |
| Max. P | 0.751934 |
| Location | 19,274,489 – 19,274,579 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 84.16 |
| Mean single sequence MFE | -23.35 |
| Consensus MFE | -16.52 |
| Energy contribution | -16.80 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.81 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.751934 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19274489 90 + 20766785 AGCAAAAGACAGAGCACGAGUAAAAAACUUGUUAAAAUUUGCUGGCCUGGCUUUCUGCUUUUU-GUGUGCUGUGGCCAAGCAAAUAACCAA .((..........))((((((.....))))))....(((((((((((((((...(........-)...)))).)))).)))))))...... ( -22.90) >DroPse_CAF1 17115 78 + 1 U-CAAAACAAAG----CCAGGAAAAAACUUGUUAAAAUUUGUUGGCCGAGCUUUUUGCU--------GGCUACGGCCAAGCAAAUAGCCAA .-.........(----((((.(((.............))).))))).(.(((.((((((--------(((....))).)))))).)))).. ( -24.72) >DroSim_CAF1 14903 90 + 1 AGCAAAACACAGAGCACGAGUAAAAAACUUGUUAAAAUUUGCUGGCAUGGCUUUCUGCUUUUU-GUGUGCUGUGGCCAAGCAAAUAACCAA .((..........))((((((.....))))))....(((((((((((((((...(........-)...))))).))).)))))))...... ( -21.00) >DroEre_CAF1 17492 88 + 1 A-CAAAACACAGAGCACGAGUAAAAAACUUGUUAAAAUUUGCUGGCCUGGCUUUCUGCUUUUUUG--UGCUAUGGCCAAGCAAAUAACCAA .-.............((((((.....))))))....(((((((((((((((..............--.)))).)))).)))))))...... ( -23.16) >DroYak_CAF1 14330 90 + 1 A-CAAAACACAGAGCACGAGUAAAAAACUUGUUAAAAUUUGCUGGCCUGGCUUUCUGCUUUUUUGUGUGCUAUGGCCAAGCAAAUAACCAA .-.............((((((.....))))))....(((((((((((((((....(((......))).)))).)))).)))))))...... ( -23.60) >DroPer_CAF1 17657 78 + 1 U-CAAAACAAAG----CCAGGAAAAAACUUGUUAAAAUUUGUUGGCCGAGCUUUUUGCU--------GGCUACGGCCAAGCAAAUAGCCAA .-.........(----((((.(((.............))).))))).(.(((.((((((--------(((....))).)))))).)))).. ( -24.72) >consensus A_CAAAACACAGAGCACGAGUAAAAAACUUGUUAAAAUUUGCUGGCCUGGCUUUCUGCUUUUU_G__UGCUAUGGCCAAGCAAAUAACCAA ................((((.......)))).....(((((((((((((((.................)))).)))).)))))))...... (-16.52 = -16.80 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:28 2006