Locus 6128

Sequence ID 2R_DroMel_CAF1
Location 19,273,559 – 19,273,653
Length 94
Max. P 0.662894
window9812

overview

Window 2

Location 19,273,559 – 19,273,653
Length 94
Sequences 5
Columns 94
Reading direction forward
Mean pairwise identity 93.01
Mean single sequence MFE -25.37
Consensus MFE -20.44
Energy contribution -21.40
Covariance contribution 0.96
Combinations/Pair 1.04
Mean z-score -1.51
Structure conservation index 0.81
SVM decision value 0.27
SVM RNA-class probability 0.662894
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 19273559 94 + 20766785
GCAGGCGCUGUUGCAUUAUUUAUGCGGUCUGAAAAUGAUUUUUUGGUUUAGUUUUAGUUUUUUGCCAGGCCAGAAAGGCAGAAAGACAGCCAGA
...(((.....(((((.....)))))((((.....((.(((((((((((.((...........)).))))))))))).))...)))).)))... ( -25.40)
>DroSec_CAF1 23660 93 + 1
GCAGGCGCUGUUGCAUUAUUUAUGCGGUCUGAAAAUGAUUUUUUGGUUUAGUUUUAGUUU-UUGCCGGGCCAGAAAGGCAGAAAGACAGCCGGA
...(((.....(((((.....)))))((((.....((.((((((((((..((........-..))..)))))))))).))...)))).)))... ( -26.90)
>DroSim_CAF1 13996 93 + 1
GCAGGCGCUGUUGCAUUAUUUAUGCGGUCUGAAAAUGAUUUUUUGGUUUAGUUUUAGUUU-UUGCCGGGCCAGAAAGGCAGAAAGACAGCCAGA
...(((.....(((((.....)))))((((.....((.((((((((((..((........-..))..)))))))))).))...)))).)))... ( -26.90)
>DroEre_CAF1 16577 86 + 1
GCAGGCGCUGUUGCAUUAUUUAUGCGGUCUGAAAAUGAUUUUUUGGUUUAGUUUUAGUUU-UUGCCGAGCCAGAAAGGCAG----ACAGCC---
...(((.....(((((.....)))))(((((.......((((((((((..((........-..))..)))))))))).)))----)).)))--- ( -25.10)
>DroYak_CAF1 13394 89 + 1
GCAGGCGCUGUUGCAUUAUUUAUGCGCUCUGAAAAUGAUUUUUUAGUUUAGUUUUAGUUU-UUGCGGAGCCAGAAAGGCAG----ACAGCCAGA
...(((.(((((((((.....))))((((((.....((((...............)))).-...))))))......)))))----...)))... ( -22.56)
>consensus
GCAGGCGCUGUUGCAUUAUUUAUGCGGUCUGAAAAUGAUUUUUUGGUUUAGUUUUAGUUU_UUGCCGGGCCAGAAAGGCAGAAAGACAGCCAGA
...(((.....(((((.....)))))((((.....((.((((((((((..((...........))..)))))))))).))...)))).)))... (-20.44 = -21.40 +   0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:27 2006