Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 19,272,734 – 19,272,826 |
Length | 92 |
Max. P | 0.523235 |
Location | 19,272,734 – 19,272,826 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 81.51 |
Mean single sequence MFE | -19.07 |
Consensus MFE | -16.16 |
Energy contribution | -14.88 |
Covariance contribution | -1.27 |
Combinations/Pair | 1.29 |
Mean z-score | -1.18 |
Structure conservation index | 0.85 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.523235 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 19272734 92 + 20766785 CCCAAUCGAAGUCGUCUGAGUUACGCAGUUUAUGGCUUAUUAAUGUGACGGCGUUUUGUUGUCAUUUUGUUGCGGCUUAUUUAUUUGU-UUUU ........(((((((.(((((((.........))))))).(((.((((((((.....)))))))).)))..)))))))..........-.... ( -18.50) >DroPse_CAF1 15363 78 + 1 --------CAG----UUGAGUUACGCAGCCCACGGCUUAUUAAUGUGGCAACGUUUUGUUGUCAUUUUGUUGCGGCUC---UAUUUUCGUUUU --------...----..((((..(((((((...)))....(((.((((((((.....)))))))).))).))))))))---............ ( -19.80) >DroSec_CAF1 22838 92 + 1 CCCAAUCGAAGUCGUCUGAGUUACGCAGUUUAUGGCUUAUUAAUGUGACGGCGUUUUGUUGUCAUUUUGUAGCGGCUUAUUUAUUUGU-UUUU ........(((((((.(((((((.........))))))).(((.((((((((.....)))))))).)))..)))))))..........-.... ( -18.60) >DroSim_CAF1 13169 92 + 1 CCCAAUCGAAGUCGUCUGAGUUACGCAGUUUAUGGCUUAUUAAUGUGACGGCGUUUUGUUGUCAUUUUGUUGCGGCUUAUUUAUUUGU-UUUU ........(((((((.(((((((.........))))))).(((.((((((((.....)))))))).)))..)))))))..........-.... ( -18.50) >DroEre_CAF1 15741 92 + 1 CUCAAUCGAAAUCGUCAGAGUUACGCAGUUUAUGGCUUAUUAAUGUGGCGGCGUUUUGUUGUCAUUUUGCUGUGGCUUAUUUAUUUGC-UUUU (((...((....))...)))...((((((..(((((.....(((((....))))).....)))))...))))))((..........))-.... ( -19.20) >DroPer_CAF1 15887 78 + 1 --------CAG----UUGAGUUACGCAGCCCACGGCUUAUUAAUGUGGCAACGUUUUGUUGUCAUUUUGUUGCGGCUC---UAUUUUCGUUUU --------...----..((((..(((((((...)))....(((.((((((((.....)))))))).))).))))))))---............ ( -19.80) >consensus CCCAAUCGAAGUCGUCUGAGUUACGCAGUUUAUGGCUUAUUAAUGUGACGGCGUUUUGUUGUCAUUUUGUUGCGGCUUAUUUAUUUGC_UUUU .................((((..((((((.....)))...(((.((((((((.....)))))))).)))..)))))))............... (-16.16 = -14.88 + -1.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:26 2006